Details for: TAF1B
Gene ID: 9014
Gene Type: Protein-coding - A gene that serves as a template for producing a messenger RNA (mRNA) molecule, which is then translated into a functional protein.
Symbol: TAF1B
Ensembl ID: ENSG00000115750
Description: TATA-box binding protein associated factor, RNA polymerase I subunit B
Selected Context(s): Overall
Cell Significance Landscape
Associated with
Significant Cells
Cell Significance Index (CSI) scores for the chosen context(s)
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CSI 6.65rCSI 18.7%PRS 65.38
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CSI 5.44rCSI 6.73%PRS 66.14
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CSI 4.31rCSI 5.17%PRS 67.57
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CSI 4.08rCSI 3.77%PRS 70.94
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CSI 3.92rCSI 10.48%PRS 60.15
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CSI 3.9rCSI 2.3%PRS 85.66
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CSI 3.88rCSI 5.77%PRS 70.13
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CSI 3.71rCSI 5.46%PRS 62.34
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CSI 3.43rCSI 6.04%PRS 65.54
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CSI 3.37rCSI 2.91%PRS 73.98
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CSI 3.23rCSI 3.18%PRS 71.89
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CSI 3.17rCSI 2.41%PRS 82.12
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CSI 2.89rCSI 4.46%PRS 67.94
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CSI 2.85rCSI 3.65%PRS 73.58
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CSI 2.72rCSI 4.34%PRS 73.36
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CSI 2.68rCSI 1.86%PRS 80.69
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CSI 2.67rCSI 6.95%PRS 69.47
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CSI 2.62rCSI 3.33%PRS 75.28
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CSI 2.59rCSI 4.24%PRS 58.26
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CSI 2.57rCSI 4.09%PRS 61.05
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CSI 2.51rCSI 2.46%PRS 84.11
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CSI 2.46rCSI 1.82%PRS 62.04
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CSI 2.45rCSI 4.33%PRS 49.52
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CSI 2.45rCSI 4.92%PRS 58.46
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CSI 2.43rCSI 3.33%PRS 61.58
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CSI 2.34rCSI 1.58%PRS 82.47
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CSI 2.34rCSI 6.94%PRS 78.93
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CSI 2.3rCSI 1.79%PRS 85.59
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CSI 2.2rCSI 2.4%PRS 72.57
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CSI 2.19rCSI 2.75%PRS 79.46
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CSI 2.15rCSI 2.57%PRS 86.76
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CSI 2.13rCSI 3.82%PRS 62.31
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CSI 2.12rCSI 2.9%PRS 74.95
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CSI 2.12rCSI 1.67%PRS 56.45
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CSI 2.12rCSI 2.04%PRS 60.89
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CSI 2.07rCSI 3.87%PRS 57.04
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CSI 2.05rCSI 2.74%PRS 77.64
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CSI 2.05rCSI 1.9%PRS 69.97
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CSI 2.03rCSI 4.04%PRS 65.84
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CSI 2rCSI 6.7%PRS 53.71
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CSI 2rCSI 4.48%PRS 51.09
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CSI 1.96rCSI 2.78%PRS 65.34
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CSI 1.96rCSI 4.78%PRS 62.23
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CSI 1.94rCSI 1.7%PRS 57.23
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CSI 1.85rCSI 2.98%PRS 52.32
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CSI 1.85rCSI 44.21%PRS 49.52
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CSI 1.84rCSI 4.22%PRS 69.74
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CSI 1.84rCSI 1.43%PRS 72.29
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CSI 1.8rCSI 4.11%PRS 60.66
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CSI 1.76rCSI 4.19%PRS 69.51
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CSI 1.73rCSI 3.04%PRS 61.62
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CSI 1.71rCSI 6.42%PRS 61.19
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CSI 1.71rCSI 1.97%PRS 61.85
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CSI 1.68rCSI 2.91%PRS 59.59
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CSI 1.67rCSI 1.17%PRS 72.25
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CSI 1.66rCSI 1.5%PRS 66.54
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CSI 1.65rCSI 2.62%PRS 61.82
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CSI 1.65rCSI 2.71%PRS 74.5
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CSI 1.63rCSI 7.8%PRS 69.09
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CSI 1.62rCSI 2.02%PRS 48.46
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CSI 1.59rCSI 3.3%PRS 66.21
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CSI 1.58rCSI 12.86%PRS 62.69
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CSI 1.54rCSI 2.14%PRS 67.81
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CSI 1.53rCSI 2.78%PRS 60.45
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CSI 1.49rCSI 3.31%PRS 67.78
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CSI 1.49rCSI 35.83%PRS 50.14
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CSI 1.46rCSI 3.78%PRS 64.09
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CSI 1.41rCSI 1.28%PRS 82.93
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CSI 1.39rCSI 2.86%PRS 58.19
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CSI 1.32rCSI 1.58%PRS 50.19
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CSI 1.25rCSI 2.09%PRS 50.4
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CSI 1.22rCSI 1.58%PRS 51.72
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CSI 1.21rCSI 1.02%PRS 72.72
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CSI 1.15rCSI 1.76%PRS 69.85
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CSI 1.12rCSI 1.16%PRS 75.01
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CSI 1.1rCSI 8.1%PRS 55.74
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CSI 1.07rCSI 1.72%PRS 58.62
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CSI 1rCSI 2.74%PRS 64.15
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CSI 0.99rCSI 1.52%PRS 65.53
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CSI 0.96rCSI 1.11%PRS 60.11
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CSI 0.94rCSI 2.25%PRS 55.94
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CSI 0.91rCSI 2%PRS 55.04
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CSI 0.89rCSI 2.32%PRS 71.87
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CSI 0.84rCSI 2.13%PRS 58.78
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CSI 0.72rCSI 1.75%PRS 48.81
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CSI 0.71rCSI 2.21%PRS 52.18
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CSI 0.69rCSI 2%PRS 69.9
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CSI 0.63rCSI 1.97%PRS 54.59
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CSI 0.52rCSI 1.98%PRS 59.63
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CSI 0.46rCSI 1.74%PRS 50.98
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CSI 0.45rCSI 1.62%PRS 48.59
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CSI 0.45rCSI 2.62%PRS 51.51
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CSI 0.4rCSI 1.96%PRS 79.51
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CSI 0.4rCSI 1.99%PRS 81.72
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CSI 0.38rCSI 3.25%PRS 56.36
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Network Configuration
Explore relationships of the current gene. Select an Interaction Source: 'ONTOLOGY' for shared pathways (GO/Reactome) or 'STRING' for protein-protein interactions. Further refine by selecting context genes and comparing Cell Significance Index (CSI) scores between baseline and target cell types and their specific contexts.
Legend:
- Query Gene
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Node Color (Target Cell CSI, relative to current network):
- Very High
- High
- Medium
- Low
- Very Low
- CSI N/A
- Node Size: Proportional to Target Cell CSI magnitude
- STRING PPI Edge
- Shared Pathway Edge (ONTOLOGY)
Other Information
This section provides additional information about the gene, including a description generated by an AI language model and details about associated proteins.
Genular Protein ID: 203408066
Symbol: TAF1B_HUMAN
Name: TATA box-binding protein-associated factor RNA polymerase I subunit B
UniProtKB Accession Codes:
Database IDs:
Citations:
PubMed ID: 7801123
Title: Reconstitution of transcription factor SL1: exclusive binding of TBP by SL1 or TFIID subunits.
PubMed ID: 7801123
PubMed ID: 14702039
Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.
PubMed ID: 14702039
DOI: 10.1038/ng1285
PubMed ID: 15815621
Title: Generation and annotation of the DNA sequences of human chromosomes 2 and 4.
PubMed ID: 15815621
DOI: 10.1038/nature03466
PubMed ID: 15489334
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
PubMed ID: 15489334
DOI: 10.1101/gr.2596504
PubMed ID: 7801130
Title: Assembly of transcriptionally active RNA polymerase I initiation factor SL1 from recombinant subunits.
PubMed ID: 7801130
PubMed ID: 7491500
Title: Coactivator and promoter-selective properties of RNA polymerase I TAFs.
PubMed ID: 7491500
PubMed ID: 10894955
Title: Genomic localization of the human genes TAF1A, TAF1B and TAF1C, encoding TAF(I)48, TAF(I)63 and TAF(I)110 subunits of class I general transcription initiation factor SL1.
PubMed ID: 10894955
DOI: 10.1159/000015592
PubMed ID: 11250903
Title: hRRN3 is essential in the SL1-mediated recruitment of RNA polymerase I to rRNA gene promoters.
PubMed ID: 11250903
PubMed ID: 11283244
Title: A step subsequent to preinitiation complex assembly at the ribosomal RNA gene promoter is rate limiting for human RNA polymerase I-dependent transcription.
PubMed ID: 11283244
PubMed ID: 15970593
Title: TBP-TAF complex SL1 directs RNA polymerase I pre-initiation complex formation and stabilizes upstream binding factor at the rDNA promoter.
PubMed ID: 15970593
PubMed ID: 19608861
Title: Lysine acetylation targets protein complexes and co-regulates major cellular functions.
PubMed ID: 19608861
PubMed ID: 21921198
Title: Yeast Rrn7 and human TAF1B are TFIIB-related RNA polymerase I general transcription factors.
PubMed ID: 21921198
PubMed ID: 21921199
Title: TAF1B is a TFIIB-like component of the basal transcription machinery for RNA polymerase I.
PubMed ID: 21921199
PubMed ID: 22814378
Title: N-terminal acetylome analyses and functional insights of the N-terminal acetyltransferase NatB.
PubMed ID: 22814378
Sequence Information:
- Length: 588
- Mass: 68832
- Checksum: CE45DE622E28FD6E
- Sequence:
MDLEEAEEFK ERCTQCAAVS WGLTDEGKYY CTSCHNVTER YQEVTNTDLI PNTQIKALNR GLKKKNNTEK GWDWYVCEGF QYILYQQAEA LKNLGVGPEL KNDVLHNFWK RYLQKSKQAY CKNPVYTTGR KPTVLEDNLS HSDWASEPEL LSDVSCPPFL ESGAESQSDI HTRKPFPVSK ASQSETSVCS GSLDGVEYSQ RKEKGIVKMT MPQTLAFCYL SLLWQREAIT LSDLLRFVEE DHIPYINAFQ HFPEQMKLYG RDRGIFGIES WPDYEDIYKK TVEVGTFLDL PRFPDITEDC YLHPNILCMK YLMEVNLPDE MHSLTCHVVK MTGMGEVDFL TFDPIAKMAK TVKYDVQAVA IIVVVLKLLF LLDDSFEWSL SNLAEKHNEK NKKDKPWFDF RKWYQIMKKA FDEKKQKWEE ARAKYLWKSE KPLYYSFVDK PVAYKKREMV VNLQKQFSTL VESTATAGKK SPSSFQFNWT EEDTDRTCFH GHSLQGVLKE KGQSLLTKNS LYWLSTQKFC RCYCTHVTTY EESNYSLSYQ FILNLFSFLL RIKTSLLHEE VSLVEKKLFE KKYSVKRKKS RSKKVRRH