Details for: IFNGR1

Gene ID: 3459

Gene Type:  Protein-coding  - A gene that serves as a template for producing a messenger RNA (mRNA) molecule, which is then translated into a functional protein.

Symbol: IFNGR1

Ensembl ID: ENSG00000027697

Description: interferon gamma receptor 1

Selected Context(s):  Overall

Cell Significance Landscape

Contexts:

Associated with

Significant Cells

Cell Significance Index (CSI) scores for the chosen context(s)

  • pulmonary artery endothelial cell CL1001568
    CSI 39.9
    rCSI 54.29%
    PRS 56.13
  • myeloid leukocyte CL0000766
    CSI 30.1
    rCSI 27.77%
    PRS 44.24
  • Hofbauer cell CL3000001
    CSI 29.89
    rCSI 56.43%
    PRS 53.35
  • CD1c-positive myeloid dendritic cell CL0002399
    CSI 24.41
    rCSI 29.49%
    PRS 50.83
  • Langerhans cell CL0000453
    CSI 21.01
    rCSI 32.09%
    PRS 60.57
  • myeloid dendritic cell CL0000782
    CSI 17.19
    rCSI 24.91%
    PRS 59.36
  • central nervous system macrophage CL0000878
    CSI 16.97
    rCSI 56.24%
    PRS 45.26
  • capillary endothelial cell CL0002144
    CSI 15.82
    rCSI 29.01%
    PRS 66.67
  • elicited macrophage CL0000861
    CSI 14.81
    rCSI 13.6%
    PRS 50.48
  • CD14-low, CD16-positive monocyte CL0002396
    CSI 14
    rCSI 10.79%
    PRS 42
  • transit amplifying cell CL0009010
    CSI 13.48
    rCSI 20.62%
    PRS 59.54
  • conventional dendritic cell CL0000990
    CSI 13.2
    rCSI 11.02%
    PRS 64.4
  • colon macrophage CL0009038
    CSI 12.97
    rCSI 59.91%
    PRS 65.71
  • macrophage CL0000235
    CSI 11.68
    rCSI 21.25%
    PRS 72.18
  • ciliated cell CL0000064
    CSI 10.75
    rCSI 17.41%
    PRS 41.94
  • syncytiotrophoblast cell CL0000525
    CSI 10.24
    rCSI 29.49%
    PRS 61.07
  • immature B cell CL0000816
    CSI 10.22
    rCSI 7.59%
    PRS 56.29
  • enteroendocrine cell CL0000164
    CSI 10
    rCSI 13.66%
    PRS 45.8
  • intermediate monocyte CL0002393
    CSI 9.72
    rCSI 14.67%
    PRS 45.16
  • activated CD8-positive, alpha-beta T cell CL0000906
    CSI 9.32
    rCSI 9.16%
    PRS 70.62
  • group 3 innate lymphoid cell CL0001071
    CSI 9.29
    rCSI 6.98%
    PRS 46.55
  • vascular leptomeningeal cell CL4023051
    CSI 8.99
    rCSI 15.77%
    PRS 35.99
  • endothelial cell of artery CL1000413
    CSI 8.85
    rCSI 12.96%
    PRS 75.13
  • cardiac muscle cell CL0000746
    CSI 8.78
    rCSI 12.59%
    PRS 35.11
  • CD14-positive, CD16-positive monocyte CL0002397
    CSI 8.3
    rCSI 10.88%
    PRS 56.26
  • kidney loop of Henle thin ascending limb epithelial cell CL1001107
    CSI 7.81
    rCSI 20.18%
    PRS 39.62
  • natural T-regulatory cell CL0000903
    CSI 7.71
    rCSI 14.6%
    PRS 77.17
  • intestine goblet cell CL0019031
    CSI 7.67
    rCSI 6.81%
    PRS 42.41
  • mesenchymal cell CL0008019
    CSI 7.47
    rCSI 18.97%
    PRS 39.57
  • dendritic cell CL0000451
    CSI 7.4
    rCSI 9.12%
    PRS 67.49
  • hepatic stellate cell CL0000632
    CSI 6.86
    rCSI 25.72%
    PRS 36.76
  • granulocyte CL0000094
    CSI 6.82
    rCSI 10.42%
    PRS 52.17
  • endothelial cell of placenta CL0009092
    CSI 6.78
    rCSI 33.41%
    PRS 54.91
  • pulmonary capillary endothelial cell CL4028001
    CSI 6.74
    rCSI 12.86%
    PRS 60.03
  • Mueller cell CL0000636
    CSI 6.37
    rCSI 14.54%
    PRS 37.15
  • inflammatory macrophage CL0000863
    CSI 6.33
    rCSI 10.82%
    PRS 69.21
  • memory T cell CL0000813
    CSI 5.7
    rCSI 10.98%
    PRS 73.23
  • alternatively activated macrophage CL0000890
    CSI 5.54
    rCSI 6.97%
    PRS 56.63
  • retinal rod cell CL0000604
    CSI 5.53
    rCSI 9.76%
    PRS 41.81
  • enteric smooth muscle cell CL0002504
    CSI 5.28
    rCSI 7.54%
    PRS 45.92
  • glioblast CL0000030
    CSI 5.26
    rCSI 8.38%
    PRS 37.44
  • corticothalamic-projecting glutamatergic cortical neuron CL4023013
    CSI 5.26
    rCSI 30.95%
    PRS 29.82
  • CD4-positive, alpha-beta memory T cell CL0000897
    CSI 5.25
    rCSI 3.77%
    PRS 55.96
  • kidney interstitial alternatively activated macrophage CL1000695
    CSI 5.19
    rCSI 13.53%
    PRS 42.43
  • cerebral cortex endothelial cell CL1001602
    CSI 5.02
    rCSI 8.68%
    PRS 34.5
  • fallopian tube secretory epithelial cell CL4030006
    CSI 4.63
    rCSI 4.46%
    PRS 43.82
  • colon epithelial cell CL0011108
    CSI 4.62
    rCSI 4.84%
    PRS 40.69
  • mature T cell CL0002419
    CSI 4.61
    rCSI 3.58%
    PRS 59.94
  • astrocyte of the cerebral cortex CL0002605
    CSI 4.49
    rCSI 10.06%
    PRS 29.09
  • fibroblast of cardiac tissue CL0002548
    CSI 4.48
    rCSI 21.47%
    PRS 41.8
  • megakaryocyte CL0000556
    CSI 4.4
    rCSI 19.08%
    PRS 59.12
  • lung ciliated cell CL1000271
    CSI 4.27
    rCSI 4.94%
    PRS 33.87
  • hepatocyte CL0000182
    CSI 4.25
    rCSI 7.6%
    PRS 41.68
  • plasmacytoid dendritic cell, human CL0001058
    CSI 4.24
    rCSI 2.96%
    PRS 45.01
  • adipocyte CL0000136
    CSI 4.2
    rCSI 5.4%
    PRS 39.15
  • central memory CD8-positive, alpha-beta T cell CL0000907
    CSI 4.15
    rCSI 2.8%
    PRS 53.3
  • alveolar adventitial fibroblast CL4028006
    CSI 4.14
    rCSI 6.55%
    PRS 44.23
  • respiratory suprabasal cell CL4033048
    CSI 4.11
    rCSI 5.27%
    PRS 47.99
  • parietal epithelial cell CL1000452
    CSI 4.07
    rCSI 10.88%
    PRS 36.62
  • lung pericyte CL0009089
    CSI 4.03
    rCSI 10.64%
    PRS 50.65
  • monocyte CL0000576
    CSI 3.99
    rCSI 7.22%
    PRS 65.62
  • CD16-positive, CD56-dim natural killer cell, human CL0000939
    CSI 3.94
    rCSI 2.62%
    PRS 69.11
  • extravillous trophoblast CL0008036
    CSI 3.84
    rCSI 4.75%
    PRS 39.32
  • fibroblast of lung CL0002553
    CSI 3.84
    rCSI 3.57%
    PRS 43.19
  • neuroblast (sensu Vertebrata) CL0000031
    CSI 3.8
    rCSI 4.88%
    PRS 41.39
  • plasmablast CL0000980
    CSI 3.74
    rCSI 2.94%
    PRS 49.62
  • CD14-positive, CD16-negative classical monocyte CL0002057
    CSI 3.74
    rCSI 22.62%
    PRS 68.02
  • melanocyte CL0000148
    CSI 3.63
    rCSI 2.69%
    PRS 37.26
  • microglial cell CL0000129
    CSI 3.59
    rCSI 14.45%
    PRS 54.34
  • lung microvascular endothelial cell CL2000016
    CSI 3.54
    rCSI 68.38%
    PRS 68.53
  • CD8-positive, alpha-beta memory T cell, CD45RO-positive CL0001203
    CSI 3.53
    rCSI 4.28%
    PRS 39.34
  • myofibroblast cell CL0000186
    CSI 3.48
    rCSI 4.82%
    PRS 48.34
  • kidney connecting tubule epithelial cell CL1000768
    CSI 3.41
    rCSI 8.65%
    PRS 34.33
  • mucosal invariant T cell CL0000940
    CSI 3.39
    rCSI 2.74%
    PRS 54.39
  • paneth cell of epithelium of small intestine CL1000343
    CSI 3.35
    rCSI 9.4%
    PRS 57.72
  • regular ventricular cardiac myocyte CL0002131
    CSI 3.35
    rCSI 20.93%
    PRS 36.16
  • respiratory hillock cell CL4030023
    CSI 3.3
    rCSI 5.88%
    PRS 58.87
  • alveolar macrophage CL0000583
    CSI 3.28
    rCSI 5.4%
    PRS 48.73
  • nasal mucosa goblet cell CL0002480
    CSI 3.24
    rCSI 3.76%
    PRS 54.13
  • placental villous trophoblast CL2000060
    CSI 3.21
    rCSI 4.95%
    PRS 41.26
  • retinal bipolar neuron CL0000748
    CSI 3.14
    rCSI 5.88%
    PRS 33.63
  • non-classical monocyte CL0000875
    CSI 3.12
    rCSI 5%
    PRS 71.93
  • CD4-positive, alpha-beta thymocyte CL0000810
    CSI 3.1
    rCSI 2.48%
    PRS 64.62
  • secretory cell CL0000151
    CSI 3.08
    rCSI 3.21%
    PRS 43.95
  • blood vessel endothelial cell CL0000071
    CSI 3.05
    rCSI 6.33%
    PRS 41.29
  • adventitial cell CL0002503
    CSI 3.02
    rCSI 7.21%
    PRS 53.94
  • alpha-beta T cell CL0000789
    CSI 3.01
    rCSI 3.52%
    PRS 58.72
  • ependymal cell CL0000065
    CSI 2.99
    rCSI 6.07%
    PRS 26.66
  • periportal region hepatocyte CL0019026
    CSI 2.95
    rCSI 11.47%
    PRS 52.12
  • CD16-negative, CD56-bright natural killer cell, human CL0000938
    CSI 2.93
    rCSI 2.2%
    PRS 75.65
  • ionocyte CL0005006
    CSI 2.9
    rCSI 3.11%
    PRS 41.26
  • epithelial cell of lower respiratory tract CL0002632
    CSI 2.85
    rCSI 2.21%
    PRS 43.67
  • Kupffer cell CL0000091
    CSI 2.85
    rCSI 6.51%
    PRS 42.7
  • cardiac endothelial cell CL0010008
    CSI 2.84
    rCSI 11.45%
    PRS 41.91
  • platelet CL0000233
    CSI 2.81
    rCSI 11.65%
    PRS 52.93
  • alveolar type 1 fibroblast cell CL4028004
    CSI 2.8
    rCSI 3.07%
    PRS 47.06
  • pulmonary alveolar type 2 cell CL0002063
    CSI 2.8
    rCSI 4.34%
    PRS 53.28
  • unswitched memory B cell CL0000970
    CSI 2.77
    rCSI 2.33%
    PRS 60.48
  • T-helper 1 cell CL0000545
    CSI 2.68
    rCSI 4.85%
    PRS 70.05
  • radial glial cell CL0000681
    CSI 2.66
    rCSI 3.7%
    PRS 42.77
  • acinar cell of salivary gland CL0002623
    CSI 0.1
    rCSI 2.4%
    PRS 66.1%
  • odontoblast CL0000060
    CSI 0.1
    rCSI 3.2%
    PRS 77.7%
  • prostate gland microvascular endothelial cell CL2000059
    CSI 0.2
    rCSI 5.2%
    PRS 70.0%
  • respiratory goblet cell CL0002370
    CSI 0.3
    rCSI 2.8%
    PRS 64.0%
  • mesenchymal lymphangioblast CL0005021
    CSI 0.3
    rCSI 7.3%
    PRS 77.7%
  • erythroid progenitor cell CL0000038
    CSI 0.3
    rCSI 1.6%
    PRS 54.0%
  • helper T cell CL0000912
    CSI 0.4
    rCSI 0.5%
    PRS 52.2%
  • basal cell of epithelium of trachea CL1000348
    CSI 0.4
    rCSI 2.6%
    PRS 67.5%
  • L6b glutamatergic cortical neuron CL4023038
    CSI 0.4
    rCSI 1.2%
    PRS 29.6%
  • metallothionein-positive alveolar macrophage CL4033042
    CSI 0.4
    rCSI 4.4%
    PRS 74.4%
  • intestinal crypt stem cell of small intestine CL0009017
    CSI 0.5
    rCSI 1.2%
    PRS 52.1%
  • mesenchymal stem cell CL0000134
    CSI 0.5
    rCSI 5.1%
    PRS 59.7%
  • tissue-resident macrophage CL0000864
    CSI 0.5
    rCSI 2.2%
    PRS 62.1%
  • pancreatic stellate cell CL0002410
    CSI 0.5
    rCSI 2.8%
    PRS 54.2%
  • enterocyte of epithelium of large intestine CL0002071
    CSI 0.5
    rCSI 2.7%
    PRS 58.1%
  • retinal cone cell CL0000573
    CSI 0.5
    rCSI 0.9%
    PRS 34.5%
  • microcirculation associated smooth muscle cell CL0008035
    CSI 0.6
    rCSI 1.7%
    PRS 45.8%
  • luminal epithelial cell of mammary gland CL0002326
    CSI 0.6
    rCSI 1.0%
    PRS 59.6%
  • type EC enteroendocrine cell CL0000577
    CSI 0.6
    rCSI 2.0%
    PRS 56.2%
  • endothelial cell of uterus CL0009095
    CSI 0.6
    rCSI 4.3%
    PRS 69.3%
  • regular atrial cardiac myocyte CL0002129
    CSI 0.6
    rCSI 2.0%
    PRS 42.7%
  • basophil CL0000767
    CSI 0.7
    rCSI 1.5%
    PRS 64.6%
  • vasa recta ascending limb cell CL1001131
    CSI 0.7
    rCSI 3.1%
    PRS 71.1%
  • luminal cell of prostate epithelium CL0002340
    CSI 0.7
    rCSI 3.7%
    PRS 58.6%
  • tracheal goblet cell CL1000329
    CSI 0.7
    rCSI 1.6%
    PRS 63.0%
  • podocyte CL0000653
    CSI 0.7
    rCSI 3.3%
    PRS 42.0%
  • follicular B cell CL0000843
    CSI 0.8
    rCSI 2.7%
    PRS 76.9%
  • bronchial goblet cell CL1000312
    CSI 0.8
    rCSI 3.1%
    PRS 64.9%
  • keratocyte CL0002363
    CSI 0.8
    rCSI 1.9%
    PRS 53.4%
  • basal cell of epidermis CL0002187
    CSI 0.8
    rCSI 1.4%
    PRS 26.9%
  • vasa recta descending limb cell CL1001285
    CSI 0.8
    rCSI 6.6%
    PRS 74.4%
  • effector memory CD8-positive, alpha-beta T cell, terminally differentiated CL0001062
    CSI 0.9
    rCSI 4.3%
    PRS 54.1%
  • tracheobronchial smooth muscle cell CL0019019
    CSI 0.9
    rCSI 1.5%
    PRS 51.8%
  • lamp5 GABAergic cortical interneuron CL4023011
    CSI 0.9
    rCSI 1.5%
    PRS 28.5%
  • corneal epithelial cell CL0000575
    CSI 0.9
    rCSI 2.6%
    PRS 60.4%
  • fibroblast of breast CL4006000
    CSI 0.9
    rCSI 3.8%
    PRS 65.4%
  • transitional stage B cell CL0000818
    CSI 0.9
    rCSI 3.0%
    PRS 75.5%
  • mucus secreting cell CL0000319
    CSI 0.9
    rCSI 1.5%
    PRS 53.6%
  • pancreatic ductal cell CL0002079
    CSI 1.0
    rCSI 1.9%
    PRS 45.2%
  • intrahepatic cholangiocyte CL0002538
    CSI 1.0
    rCSI 2.3%
    PRS 59.0%
  • neutrophil CL0000775
    CSI 1.0
    rCSI 5.6%
    PRS 56.4%
  • intraepithelial lymphocyte CL0002496
    CSI 1.0
    rCSI 2.7%
    PRS 81.1%
  • type B pancreatic cell CL0000169
    CSI 1.0
    rCSI 2.2%
    PRS 40.7%
  • common myeloid progenitor CL0000049
    CSI 1.0
    rCSI 0.8%
    PRS 43.9%
  • professional antigen presenting cell CL0000145
    CSI 1.0
    rCSI 3.5%
    PRS 75.0%
  • lung resident memory CD8-positive, alpha-beta T cell CL4033039
    CSI 1.0
    rCSI 2.7%
    PRS 74.5%
  • hair follicular keratinocyte CL2000092
    CSI 1.0
    rCSI 18.1%
    PRS 77.4%
  • lung macrophage CL1001603
    CSI 1.1
    rCSI 2.4%
    PRS 49.7%
  • paneth cell CL0000510
    CSI 1.1
    rCSI 1.6%
    PRS 60.6%
  • chondrocyte CL0000138
    CSI 1.1
    rCSI 1.8%
    PRS 36.8%
  • club cell CL0000158
    CSI 1.2
    rCSI 1.7%
    PRS 43.0%
  • conjunctival epithelial cell CL1000432
    CSI 1.2
    rCSI 1.8%
    PRS 43.9%
  • mammary gland epithelial cell CL0002327
    CSI 1.2
    rCSI 4.1%
    PRS 58.7%
  • glycinergic amacrine cell CL4030028
    CSI 1.2
    rCSI 3.2%
    PRS 43.3%
  • glial cell CL0000125
    CSI 1.2
    rCSI 4.7%
    PRS 37.2%
  • mature B cell CL0000785
    CSI 1.2
    rCSI 1.1%
    PRS 52.3%
  • transit amplifying cell of colon CL0009011
    CSI 1.3
    rCSI 1.5%
    PRS 47.0%
  • choroid plexus epithelial cell CL0000706
    CSI 1.3
    rCSI 2.1%
    PRS 34.5%
  • caudal ganglionic eminence derived cortical interneuron CL4023064
    CSI 1.3
    rCSI 2.3%
    PRS 27.5%
  • lung secretory cell CL1000272
    CSI 1.3
    rCSI 3.3%
    PRS 41.4%
  • common lymphoid progenitor CL0000051
    CSI 1.4
    rCSI 1.9%
    PRS 65.6%
  • promyelocyte CL0000836
    CSI 1.4
    rCSI 2.0%
    PRS 53.3%
  • stromal cell of ovary CL0002132
    CSI 1.4
    rCSI 3.9%
    PRS 58.6%
  • keratinocyte CL0000312
    CSI 1.5
    rCSI 1.2%
    PRS 48.3%
  • double-positive, alpha-beta thymocyte CL0000809
    CSI 1.5
    rCSI 1.5%
    PRS 56.3%
  • enterocyte CL0000584
    CSI 1.5
    rCSI 2.4%
    PRS 52.2%
  • multi-ciliated epithelial cell CL0005012
    CSI 1.5
    rCSI 1.5%
    PRS 37.8%
  • rod bipolar cell CL0000751
    CSI 1.5
    rCSI 2.7%
    PRS 37.0%
  • ciliated columnar cell of tracheobronchial tree CL0002145
    CSI 1.5
    rCSI 3.4%
    PRS 42.0%
  • pulmonary ionocyte CL0017000
    CSI 1.5
    rCSI 1.9%
    PRS 50.8%
  • epithelial cell of lung CL0000082
    CSI 1.5
    rCSI 1.3%
    PRS 41.8%
  • class switched memory B cell CL0000972
    CSI 1.6
    rCSI 1.2%
    PRS 61.7%
  • VIP GABAergic cortical interneuron CL4023016
    CSI 1.6
    rCSI 1.9%
    PRS 28.4%
  • common dendritic progenitor CL0001029
    CSI 1.6
    rCSI 2.0%
    PRS 52.9%
  • myoepithelial cell CL0000185
    CSI 1.6
    rCSI 4.1%
    PRS 51.5%
  • glandular epithelial cell CL0000150
    CSI 1.6
    rCSI 4.3%
    PRS 65.9%
  • endothelial cell of pericentral hepatic sinusoid CL0019022
    CSI 1.7
    rCSI 5.1%
    PRS 55.5%
  • CD8-positive, alpha-beta cytotoxic T cell CL0000794
    CSI 1.7
    rCSI 2.0%
    PRS 63.5%
  • lymphoid lineage restricted progenitor cell CL0000838
    CSI 1.7
    rCSI 6.5%
    PRS 63.5%
  • epithelial cell CL0000066
    CSI 1.7
    rCSI 2.6%
    PRS 45.6%
  • activated type II NK T cell CL0000931
    CSI 1.7
    rCSI 1.9%
    PRS 59.5%
  • duct epithelial cell CL0000068
    CSI 1.7
    rCSI 2.5%
    PRS 46.1%
  • intestinal epithelial cell CL0002563
    CSI 1.7
    rCSI 1.8%
    PRS 42.9%
  • L5 extratelencephalic projecting glutamatergic cortical neuron CL4023041
    CSI 1.7
    rCSI 6.1%
    PRS 27.4%
  • granulocyte monocyte progenitor cell CL0000557
    CSI 1.7
    rCSI 1.5%
    PRS 46.9%
  • BEST4+ enteroycte CL4030026
    CSI 1.7
    rCSI 2.2%
    PRS 46.0%
  • lung neuroendocrine cell CL1000223
    CSI 1.7
    rCSI 2.6%
    PRS 48.1%
  • neural crest cell CL0011012
    CSI 1.8
    rCSI 1.4%
    PRS 31.7%
  • lung interstitial macrophage CL4033043
    CSI 1.8
    rCSI 4.0%
    PRS 63.4%
  • promonocyte CL0000559
    CSI 1.8
    rCSI 3.0%
    PRS 52.5%
  • acinar cell CL0000622
    CSI 1.8
    rCSI 2.6%
    PRS 54.3%
  • centrilobular region hepatocyte CL0019029
    CSI 1.8
    rCSI 4.6%
    PRS 51.6%
  • mucous neck cell CL0000651
    CSI 1.8
    rCSI 2.6%
    PRS 56.8%
  • megakaryocyte-erythroid progenitor cell CL0000050
    CSI 1.9
    rCSI 1.7%
    PRS 40.1%
  • neuroblast (sensu Nematoda and Protostomia) CL0000338
    CSI 1.9
    rCSI 2.2%
    PRS 37.9%
  • vascular associated smooth muscle cell CL0000359
    CSI 1.9
    rCSI 6.1%
    PRS 46.2%
  • CD8-positive, alpha-beta thymocyte CL0000811
    CSI 1.9
    rCSI 2.9%
    PRS 70.4%
  • T-helper 17 cell CL0000899
    CSI 1.9
    rCSI 1.5%
    PRS 65.2%
  • retinal blood vessel endothelial cell CL0002585
    CSI 1.9
    rCSI 3.0%
    PRS 47.0%
  • pvalb GABAergic cortical interneuron CL4023018
    CSI 1.9
    rCSI 2.4%
    PRS 27.0%

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Network Configuration

Explore relationships of the current gene. Select an Interaction Source: 'ONTOLOGY' for shared pathways (GO/Reactome) or 'STRING' for protein-protein interactions. Further refine by selecting context genes and comparing Cell Significance Index (CSI) scores between baseline and target cell types and their specific contexts.

Comma-separated if multiple.
Comma-separated if multiple.

Legend:
  • Query Gene
  • Node Color (Target Cell CSI, relative to current network):
    • Very High
    • High
    • Medium
    • Low
    • Very Low
    • CSI N/A
  • Node Size: Proportional to Target Cell CSI magnitude
  • STRING PPI Edge
  • Shared Pathway Edge (ONTOLOGY)

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Other Information

This section provides additional information about the gene, including a description generated by an AI language model and details about associated proteins.

## Summary Analyzed for its expression specificity (CSI Z-Score), interferon gamma receptor 1 ([IFNGR1](/details-gene/3459)) is revealed not as a cell-defining marker, but as a broadly expressed and functionally essential receptor. Its consistently low CSI (Z-SCORE) of 0.00 across a wide array of immune and non-immune cells, including myeloid, dendritic, and endothelial lineages, indicates that its presence is a fundamental requirement for cellular responsiveness to interferon-gamma (IFN-γ) rather than a feature that distinguishes one cell type from another. This widespread expression pattern is consistent with its central role in orchestrating systemic immune responses, particularly against viral and intracellular pathogens. ## Cellular Roles and Expression Landscape The expression profile of [IFNGR1](/details-gene/3459) is characterized by its breadth rather than its specificity. The analysis, based on the **CSI (Z-SCORE)**, shows no significant cell-type-specific enrichment. In the **Overall** context, [IFNGR1](/details-gene/3459) is expressed in diverse cell populations, including [myeloid leukocyte](/details-cell/CL0000766), various macrophage subtypes like [Hofbauer cell](/details-cell/CL3000001), [central nervous system macrophage](/details-cell/CL0000878), and [colon macrophage](/details-cell/CL0009038), as well as antigen-presenting cells such as [CD1c-positive myeloid dendritic cell](/details-cell/CL0002399) and [Langerhans cell](/details-cell/CL0000453). Its presence is also noted in structural cells like [pulmonary artery endothelial cell](/details-cell/CL1001568) and [capillary endothelial cell](/details-cell/CL0002144). For all these cell types, the CSI (Z-SCORE) is 0.00 with non-significant p-values, and percentile ranks (PRS) are generally in the mid-range (42-72%). This statistical profile strongly suggests that while [IFNGR1](/details-gene/3459) is functionally active in these cells, its expression level is not a unique or distinguishing characteristic. Instead, this pattern highlights the universal importance of the IFN-γ signaling axis across the immune system and at barrier tissues. The receptor enables a wide variety of cells to sense and respond to IFN-γ, a pleiotropic cytokine critical for host defense. ## Pathways and Molecular Function The functional annotations for [IFNGR1](/details-gene/3459) align perfectly with its broad cellular expression, underscoring its role as the primary sensor for IFN-γ. As a type II interferon receptor, it is a key component of the '[Interferon gamma signaling](/details-pathway/R-HSA-877300)' pathway, which is integral to the broader '[Cytokine signaling in immune system](/details-pathway/R-HSA-1280215)' network. Upon ligand binding, the receptor initiates a signaling cascade, as described in '[Type ii interferon-mediated signaling pathway](/details-pathway/GO:0060333)', that is crucial for mounting immune responses. This function is essential for processes like '[Cellular response to virus](/details-pathway/GO:0098586)' and is implicated in pathways related to '[Infectious disease](/details-pathway/R-HSA-5663205)'. The expression of [IFNGR1](/details-gene/3459) on myeloid cells such as macrophages and dendritic cells is consistent with its role in '[Microglial cell activation](/details-pathway/GO:0001774)' and the regulation of TNF production ([GO:0032760](https://www.ebi.ac.uk/QuickGO/term/GO:0032760)). Its function is so critical that genetic defects are associated with severe immunodeficiencies, particularly increased susceptibility to mycobacterial infections ([209950](https://omim.org/entry/209950)), highlighting its non-redundant role in host defense. Furthermore, variants have been associated with autoimmune conditions like systemic lupus erythematosus ([PubMed: 10079289](https://pubmed.ncbi.nlm.nih.gov/10079289/)), demonstrating the importance of tightly regulated IFN-γ signaling. ## Research Directions The widespread but non-specific expression of [IFNGR1](/details-gene/3459) suggests that its functional outcomes are likely dictated by the cellular context, including post-translational modifications and the availability of downstream signaling partners, rather than by transcript abundance alone. ### Testable Hypotheses 1. **Hypothesis:** Given the uniform expression but diverse functional roles of IFN-γ across different cell types, the signaling output of [IFNGR1](/details-gene/3459) is determined by cell-type-specific composition of its signalosome. For example, signaling in endothelial cells may be biased towards antiviral responses, while in macrophages it may favor pro-inflammatory cytokine production. * **Experimental Approach:** Utilize co-immunoprecipitation followed by mass spectrometry (Co-IP/MS) in primary [pulmonary artery endothelial cells](/details-cell/CL1001568) versus primary human [macrophages](/details-cell/CL0000235) stimulated with IFN-γ. This will identify differential association of [IFNGR1](/details-gene/3459) with adaptor proteins, kinases (e.g., JAK1/2), and phosphatases, providing a mechanistic basis for cell-specific signaling outcomes. 2. **Hypothesis:** Within a seemingly homogenous population like [myeloid leukocytes](/details-cell/CL0000766), the functional responsiveness to IFN-γ is heterogeneous and correlates with the surface protein density of IFNGR1 (CDw119) rather than its mRNA transcript level. * **Experimental Approach:** Employ CITE-seq (Cellular Indexing of Transcriptomes and Epitopes by Sequencing) on human PBMCs. This will allow for the simultaneous quantification of [IFNGR1](/details-gene/3459) mRNA and surface protein on a single-cell basis. Following IFN-γ stimulation, the expression of downstream target genes (e.g., *IRF1*, *CXCL10*) can be correlated with pre-stimulation protein levels to determine if surface receptor density is the primary determinant of signaling capacity. 3. **Hypothesis:** Pathogens have evolved cell-type-specific mechanisms to antagonize [IFNGR1](/details-gene/3459) signaling as an immune evasion strategy. A virus infecting epithelial or endothelial cells might target the receptor for degradation, a mechanism that may be different or less effective in professional antigen-presenting cells like [Langerhans cells](/details-cell/CL0000453). * **Experimental Approach:** Infect primary human [capillary endothelial cells](/details-cell/CL0002144) and [Langerhans cells](/details-cell/CL0000453) with a virus known to modulate interferon signaling, such as influenza A virus, which has been shown to mediate receptor degradation ([PubMed: 29343571](https://pubmed.ncbi.nlm.nih.gov/29343571/)). Quantify IFNGR1 surface levels via flow cytometry and total protein levels via western blot over a time course of infection to identify cell-specific differences in receptor stability and function. ### Therapeutic Potential The ubiquitous expression of [IFNGR1](/details-gene/3459) makes it a challenging therapeutic target for cell-specific interventions, as systemic modulation would likely cause widespread effects. However, its central role in immunity presents significant opportunities. In oncology, augmenting IFN-γ signaling via targeted agonists or by inhibiting negative regulators could enhance anti-tumor immunity. Conversely, in autoimmune diseases driven by IFN-γ, such as systemic lupus erythematosus, targeted antagonism of the receptor or its downstream pathways could be beneficial. Finally, for patients with Mendelian susceptibility to mycobacterial disease due to mutations in [IFNGR1](/details-gene/3459) ([PubMed: 10192386](https://pubmed.ncbi.nlm.nih.gov/10192386/)), gene therapy or strategies to restore receptor function represent a direct therapeutic path.

Genular Protein ID: 3807549703

Symbol: INGR1_HUMAN

Name: CDw119

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 2971451

Title: Molecular cloning and expression of the human interferon-gamma receptor.

PubMed ID: 2971451

DOI: 10.1016/0092-8674(88)90050-5

PubMed ID: 14702039

Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.

PubMed ID: 14702039

DOI: 10.1038/ng1285

PubMed ID: 14574404

Title: The DNA sequence and analysis of human chromosome 6.

PubMed ID: 14574404

DOI: 10.1038/nature02055

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 8443182

Title: Alignment of disulfide bonds of the extracellular domain of the interferon gamma receptor and investigation of their role in biological activity.

PubMed ID: 8443182

DOI: 10.1021/bi00060a038

PubMed ID: 8156998

Title: Ligand-induced IFN gamma receptor tyrosine phosphorylation couples the receptor to its signal transduction system (p91).

PubMed ID: 8156998

DOI: 10.1002/j.1460-2075.1994.tb06422.x

PubMed ID: 7615558

Title: The Jak kinases differentially associate with the alpha and beta (accessory factor) chains of the interferon gamma receptor to form a functional receptor unit capable of activating STAT transcription factors.

PubMed ID: 7615558

DOI: 10.1074/jbc.270.29.17528

PubMed ID: 7673114

Title: Interaction between the components of the interferon gamma receptor complex.

PubMed ID: 7673114

DOI: 10.1074/jbc.270.36.20915

PubMed ID: 10079289

Title: Association of the interferon-gamma receptor variant (Val14Met) with systemic lupus erythematosus.

PubMed ID: 10079289

DOI: 10.1007/s002510050492

PubMed ID: 10192386

Title: A human IFNGR1 small deletion hotspot associated with dominant susceptibility to mycobacterial infection.

PubMed ID: 10192386

DOI: 10.1038/7701

PubMed ID: 23186163

Title: Toward a comprehensive characterization of a human cancer cell phosphoproteome.

PubMed ID: 23186163

DOI: 10.1021/pr300630k

PubMed ID: 28883123

Title: Post-translational modification of the interferon-gamma receptor alters its stability and signaling.

PubMed ID: 28883123

DOI: 10.1042/bcj20170548

PubMed ID: 29343571

Title: Casein Kinase 1alpha Mediates the Degradation of Receptors for Type I and Type II Interferons Caused by Hemagglutinin of Influenza A Virus.

PubMed ID: 29343571

DOI: 10.1128/jvi.00006-18

PubMed ID: 7617032

Title: Crystal structure of a complex between interferon-gamma and its soluble high-affinity receptor.

PubMed ID: 7617032

DOI: 10.1038/376230a0

PubMed ID: 9367779

Title: Neutralizing epitopes on the extracellular interferon gamma receptor (IFNgammaR) alpha-chain characterized by homolog scanning mutagenesis and X-ray crystal structure of the A6 fab-IFNgammaR1-108 complex.

PubMed ID: 9367779

DOI: 10.1006/jmbi.1997.1336

PubMed ID: 10986460

Title: Observation of an unexpected third receptor molecule in the crystal structure of human interferon-gamma receptor complex.

PubMed ID: 10986460

DOI: 10.1016/s0969-2126(00)00184-2

PubMed ID: 9389728

Title: Partial interferon-gamma receptor 1 deficiency in a child with tuberculoid bacillus Calmette-Guerin infection and a sibling with clinical tuberculosis.

PubMed ID: 9389728

DOI: 10.1172/jci119810

PubMed ID: 28744922

Title: IFN-gammaR1 defects: Mutation update and description of the IFNGR1 variation database.

PubMed ID: 28744922

DOI: 10.1002/humu.23302

PubMed ID: 10811850

Title: In a novel form of IFN-gamma receptor 1 deficiency, cell surface receptors fail to bind IFN-gamma.

PubMed ID: 10811850

DOI: 10.1172/jci9166

PubMed ID: 11139207

Title: A point mutation in a domain of gamma interferon receptor 1 provokes severe immunodeficiency.

PubMed ID: 11139207

DOI: 10.1128/cdli.8.1.133-137.2001

PubMed ID: 11240951

Title: Association of IFN-gamma and IFN regulatory factor 1 polymorphisms with childhood atopic asthma.

PubMed ID: 11240951

DOI: 10.1067/mai.2001.113051

PubMed ID: 11335768

Title: Recurrent Mycobacterium avium osteomyelitis associated with a novel dominant interferon gamma receptor mutation.

PubMed ID: 11335768

DOI: 10.1542/peds.107.4.e47

PubMed ID: 12516030

Title: Genomewide linkage analysis identifies polymorphism in the human interferon-gamma receptor affecting Helicobacter pylori infection.

PubMed ID: 12516030

DOI: 10.1086/367714

PubMed ID: 12851715

Title: A novel single-nucleotide substitution, Leu 467 Pro, in the interferon-gamma receptor 1 gene associated with allergic diseases.

PubMed ID: 12851715

PubMed ID: 15589309

Title: Clinical features of dominant and recessive interferon gamma receptor 1 deficiencies.

PubMed ID: 15589309

DOI: 10.1016/s0140-6736(04)17552-1

PubMed ID: 16715106

Title: Successful hematopoietic stem cell transplantation in a child with active disseminated Mycobacterium fortuitum infection and interferon-gamma receptor 1 deficiency.

PubMed ID: 16715106

DOI: 10.1038/sj.bmt.1705399

PubMed ID: 16195661

Title: Disseminated Mycobacterium avium infection in a 20-year-old female with partial recessive IFNgammaR1 deficiency.

PubMed ID: 16195661

DOI: 10.1159/000088682

PubMed ID: 17514500

Title: Two patients with complete defects in interferon gamma receptor-dependent signaling.

PubMed ID: 17514500

DOI: 10.1007/s10875-007-9097-8

PubMed ID: 20186794

Title: Paternal uniparental isodisomy of chromosome 6 causing a complex syndrome including complete IFN-gamma receptor 1 deficiency.

PubMed ID: 20186794

DOI: 10.1002/ajmg.a.33291

PubMed ID: 20015550

Title: Functional analysis of naturally occurring amino acid substitutions in human IFN-gammaR1.

PubMed ID: 20015550

DOI: 10.1016/j.molimm.2009.11.016

PubMed ID: 22708048

Title: Mendelian susceptibility to mycobacterial disease in egyptian children.

PubMed ID: 22708048

DOI: 10.4084/mjhid.2012.033

PubMed ID: 25592983

Title: Hemophagocytic lymphohistiocytosis in 2 patients with underlying IFN-gamma receptor deficiency.

PubMed ID: 25592983

DOI: 10.1016/j.jaci.2014.11.030

PubMed ID: 26343451

Title: Targeted deep sequencing identifies rare loss-of-function variants in IFNGR1 for risk of atopic dermatitis complicated by eczema herpeticum.

PubMed ID: 26343451

DOI: 10.1016/j.jaci.2015.06.047

PubMed ID: 27868075

Title: Novel mutation of interferon-gamma receptor 1 gene presenting as early life mycobacterial bronchial disease.

PubMed ID: 27868075

DOI: 10.1177/2324709616675463

Sequence Information:

  • Length: 489
  • Mass: 54405
  • Checksum: DCF9E574D8F47400
  • Sequence:
  • MALLFLLPLV MQGVSRAEMG TADLGPSSVP TPTNVTIESY NMNPIVYWEY QIMPQVPVFT 
    VEVKNYGVKN SEWIDACINI SHHYCNISDH VGDPSNSLWV RVKARVGQKE SAYAKSEEFA 
    VCRDGKIGPP KLDIRKEEKQ IMIDIFHPSV FVNGDEQEVD YDPETTCYIR VYNVYVRMNG 
    SEIQYKILTQ KEDDCDEIQC QLAIPVSSLN SQYCVSAEGV LHVWGVTTEK SKEVCITIFN 
    SSIKGSLWIP VVAALLLFLV LSLVFICFYI KKINPLKEKS IILPKSLISV VRSATLETKP 
    ESKYVSLITS YQPFSLEKEV VCEEPLSPAT VPGMHTEDNP GKVEHTEELS SITEVVTTEE 
    NIPDVVPGSH LTPIERESSS PLSSNQSEPG SIALNSYHSR NCSESDHSRN GFDTDSSCLE 
    SHSSLSDSEF PPNNKGEIKT EGQELITVIK APTSFGYDKP HVLVDLLVDD SGKESLIGYR 
    PTEDSKEFS

Genular Protein ID: 1719020073

Symbol: A0A2R8Y4U4_HUMAN

Name: N/A

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 11237011

Title: Initial sequencing and analysis of the human genome.

PubMed ID: 11237011

DOI: 10.1038/35057062

PubMed ID: 14574404

Title: The DNA sequence and analysis of human chromosome 6.

PubMed ID: 14574404

DOI: 10.1038/nature02055

PubMed ID: 15496913

Title: Finishing the euchromatic sequence of the human genome.

PubMed ID: 15496913

DOI: 10.1038/nature03001

PubMed ID: 23186163

Title: Toward a comprehensive characterization of a human cancer cell phosphoproteome.

PubMed ID: 23186163

Sequence Information:

  • Length: 479
  • Mass: 53643
  • Checksum: 4F50EE17490467CA
  • Sequence:
  • MLLKSPENSL LQFQFKYGVP TPTNVTIESY NMNPIVYWEY QIMPQVPVFT VEVKNYGVKN 
    SEWIDACINI SHHYCNISDH VGDPSNSLWV RVKARVGQKE SAYAKSEEFA VCRDGKIGPP 
    KLDIRKEEKQ IMIDIFHPSV FVNGDEQEVD YDPETTCYIR VYNVYVRMNG SEIQYKILTQ 
    KEDDCDEIQC QLAIPVSSLN SQYCVSAEGV LHVWGVTTEK SKEVCITIFN SSIKGSLWIP 
    VVAALLLFLV LSLVFICFYI KKINPLKEKS IILPKSLISV VRSATLETKP ESKYVSLITS 
    YQPFSLEKEV VCEEPLSPAT VPGMHTEDNP GKVEHTEELS SITEVVTTEE NIPDVVPGSH 
    LTPIERESSS PLSSNQSEPG SIALNSYHSR NCSESDHSRN GFDTDSSCLE SHSSLSDSEF 
    PPNNKGEIKT EGQELITVIK APTSFGYDKP HVLVDLLVDD SGKESLIGYR PTEDSKEFS