Details for: ZNHIT3

Gene ID: 9326

Gene Type:  Protein-coding  - A gene that serves as a template for producing a messenger RNA (mRNA) molecule, which is then translated into a functional protein.

Symbol: ZNHIT3

Ensembl ID: ENSG00000273611

Description: zinc finger HIT-type containing 3

Cell Significance Landscape

Associated with

Significant Cells

Cell Significance Index (CSI) scores for the chosen context(s)

  • tracheobronchial smooth muscle cell CL0019019
    CSI 15.55
    rCSI 27.42%
    PRS 81.95
  • elicited macrophage CL0000861
    CSI 6.81
    rCSI 6.25%
    PRS 84.11
  • rod bipolar cell CL0000751
    CSI 6.59
    rCSI 11.84%
    PRS 68.79
  • CD14-low, CD16-positive monocyte CL0002396
    CSI 6.26
    rCSI 4.82%
    PRS 77.88
  • CD4-positive, CD25-positive, alpha-beta regulatory T cell CL0000792
    CSI 6.21
    rCSI 6.09%
    PRS 89.41
  • transit amplifying cell CL0009010
    CSI 6
    rCSI 9.17%
    PRS 85.24
  • effector CD4-positive, alpha-beta T cell CL0001044
    CSI 5.51
    rCSI 15.81%
    PRS 92.34
  • hematopoietic precursor cell CL0008001
    CSI 4.97
    rCSI 5.11%
    PRS 88.41
  • central memory CD4-positive, alpha-beta T cell CL0000904
    CSI 4.91
    rCSI 2.9%
    PRS 90.96
  • epithelial cell of lung CL0000082
    CSI 4.85
    rCSI 4.02%
    PRS 76.19
  • caudal ganglionic eminence derived cortical interneuron CL4023064
    CSI 4.68
    rCSI 8.26%
    PRS 56.19
  • effector CD8-positive, alpha-beta T cell CL0001050
    CSI 4.6
    rCSI 3.5%
    PRS 88.08
  • perivascular cell CL4033054
    CSI 4.35
    rCSI 5.94%
    PRS 80.5
  • CD4-positive, alpha-beta memory T cell CL0000897
    CSI 4.12
    rCSI 2.96%
    PRS 88.47
  • T-helper 17 cell CL0000899
    CSI 3.83
    rCSI 3.04%
    PRS 92.75
  • CD4-positive, alpha-beta thymocyte CL0000810
    CSI 3.72
    rCSI 2.98%
    PRS 90.43
  • basal cell CL0000646
    CSI 3.5
    rCSI 4.67%
    PRS 74.62
  • unswitched memory B cell CL0000970
    CSI 3.36
    rCSI 2.82%
    PRS 89.03
  • activated type II NK T cell CL0000931
    CSI 3.27
    rCSI 3.68%
    PRS 89.26
  • retinal ganglion cell CL0000740
    CSI 3.23
    rCSI 7.14%
    PRS 61.05
  • interneuron CL0000099
    CSI 3.22
    rCSI 6.47%
    PRS 65.18
  • neural crest cell CL0011012
    CSI 3.04
    rCSI 2.4%
    PRS 63.45
  • ON-bipolar cell CL0000749
    CSI 3.04
    rCSI 4.51%
    PRS 76.11
  • colon epithelial cell CL0011108
    CSI 2.92
    rCSI 3.05%
    PRS 72.82
  • respiratory basal cell CL0002633
    CSI 2.89
    rCSI 3%
    PRS 80.42
  • pancreatic D cell CL0000173
    CSI 2.86
    rCSI 2.82%
    PRS 78.49
  • pancreatic acinar cell CL0002064
    CSI 2.85
    rCSI 3.79%
    PRS 81.54
  • activated CD4-positive, alpha-beta T cell CL0000896
    CSI 2.79
    rCSI 2.58%
    PRS 90.58
  • class switched memory B cell CL0000972
    CSI 2.78
    rCSI 2.07%
    PRS 88.67
  • ciliated cell CL0000064
    CSI 2.75
    rCSI 4.45%
    PRS 70.99
  • pulmonary ionocyte CL0017000
    CSI 2.74
    rCSI 3.34%
    PRS 82.56
  • early lymphoid progenitor CL0000936
    CSI 2.73
    rCSI 2.4%
    PRS 80.9
  • fallopian tube secretory epithelial cell CL4030006
    CSI 2.67
    rCSI 2.57%
    PRS 74.95
  • epithelial cell of lower respiratory tract CL0002632
    CSI 2.6
    rCSI 2.01%
    PRS 79.14
  • CD8-positive, alpha-beta thymocyte CL0000811
    CSI 2.59
    rCSI 4.04%
    PRS 93.27
  • immature B cell CL0000816
    CSI 2.59
    rCSI 1.92%
    PRS 87.13
  • hematopoietic stem cell CL0000037
    CSI 2.53
    rCSI 1.68%
    PRS 78.51
  • T follicular helper cell CL0002038
    CSI 2.52
    rCSI 1.89%
    PRS 88.53
  • endocrine cell CL0000163
    CSI 2.4
    rCSI 12.3%
    PRS 92.28
  • mucus secreting cell CL0000319
    CSI 2.35
    rCSI 3.74%
    PRS 84.94
  • extravillous trophoblast CL0008036
    CSI 2.34
    rCSI 2.89%
    PRS 73.29
  • common dendritic progenitor CL0001029
    CSI 2.33
    rCSI 2.93%
    PRS 84.94
  • plasmablast CL0000980
    CSI 2.32
    rCSI 1.83%
    PRS 81.63
  • pro-B cell CL0000826
    CSI 2.31
    rCSI 1.91%
    PRS 78.13
  • CD8-positive, alpha-beta cytotoxic T cell CL0000794
    CSI 2.29
    rCSI 2.74%
    PRS 90.94
  • sst GABAergic cortical interneuron CL4023017
    CSI 2.29
    rCSI 2.95%
    PRS 58.23
  • CD4-positive helper T cell CL0000492
    CSI 2.29
    rCSI 1.73%
    PRS 88.02
  • megakaryocyte-erythroid progenitor cell CL0000050
    CSI 2.25
    rCSI 2.03%
    PRS 73.47
  • hematopoietic multipotent progenitor cell CL0000837
    CSI 2.25
    rCSI 5.41%
    PRS 89.49
  • epithelial cell CL0000066
    CSI 2.24
    rCSI 3.45%
    PRS 66.32
  • promyelocyte CL0000836
    CSI 2.23
    rCSI 3.21%
    PRS 82.62
  • fraction A pre-pro B cell CL0002045
    CSI 2.21
    rCSI 2.53%
    PRS 87.74
  • common lymphoid progenitor CL0000051
    CSI 2.21
    rCSI 2.95%
    PRS 91.09
  • effector memory CD4-positive, alpha-beta T cell CL0000905
    CSI 2.2
    rCSI 2.99%
    PRS 93.26
  • radial glial cell CL0000681
    CSI 2.18
    rCSI 3.03%
    PRS 74.25
  • group 3 innate lymphoid cell CL0001071
    CSI 2.17
    rCSI 1.63%
    PRS 81.64
  • acinar cell CL0000622
    CSI 2.14
    rCSI 3.14%
    PRS 85.66
  • mucous neck cell CL0000651
    CSI 2.13
    rCSI 3.08%
    PRS 83.73
  • conjunctival epithelial cell CL1000432
    CSI 2.11
    rCSI 3.23%
    PRS 75.97
  • retina horizontal cell CL0000745
    CSI 2.09
    rCSI 3.19%
    PRS 72.3
  • alternatively activated macrophage CL0000890
    CSI 2.08
    rCSI 2.61%
    PRS 85.79
  • stem cell CL0000034
    CSI 2.07
    rCSI 2%
    PRS 68.16
  • myoepithelial cell CL0000185
    CSI 2.07
    rCSI 5.24%
    PRS 81.39
  • keratinocyte CL0000312
    CSI 2.07
    rCSI 1.73%
    PRS 78.94
  • mature B cell CL0000785
    CSI 2.05
    rCSI 1.78%
    PRS 85.4
  • placental villous trophoblast CL2000060
    CSI 2.05
    rCSI 3.16%
    PRS 74.72
  • M cell of gut CL0000682
    CSI 2.04
    rCSI 2.16%
    PRS 81.86
  • ionocyte CL0005006
    CSI 2.02
    rCSI 2.16%
    PRS 76.51
  • ciliated epithelial cell CL0000067
    CSI 2.01
    rCSI 1.77%
    PRS 64.17
  • intermediate monocyte CL0002393
    CSI 1.99
    rCSI 3%
    PRS 81.16
  • double-positive, alpha-beta thymocyte CL0000809
    CSI 1.96
    rCSI 2%
    PRS 86.13
  • ependymal cell CL0000065
    CSI 1.87
    rCSI 3.8%
    PRS 53.72
  • neuroblast (sensu Nematoda and Protostomia) CL0000338
    CSI 1.85
    rCSI 2.14%
    PRS 67.71
  • pvalb GABAergic cortical interneuron CL4023018
    CSI 1.84
    rCSI 2.29%
    PRS 54.92
  • mesodermal cell CL0000222
    CSI 1.84
    rCSI 2.21%
    PRS 73.68
  • erythrocyte CL0000232
    CSI 1.83
    rCSI 4.14%
    PRS 77.12
  • neuroblast (sensu Vertebrata) CL0000031
    CSI 1.81
    rCSI 2.32%
    PRS 71.95
  • retinal blood vessel endothelial cell CL0002585
    CSI 1.8
    rCSI 2.88%
    PRS 79.49
  • multi-ciliated epithelial cell CL0005012
    CSI 1.76
    rCSI 1.76%
    PRS 69.29
  • vascular associated smooth muscle cell CL0000359
    CSI 1.75
    rCSI 5.67%
    PRS 74.03
  • intestinal tuft cell CL0019032
    CSI 1.74
    rCSI 2.65%
    PRS 79.75
  • goblet cell CL0000160
    CSI 1.7
    rCSI 1.6%
    PRS 74.66
  • intestine goblet cell CL0019031
    CSI 1.69
    rCSI 1.5%
    PRS 73.51
  • enteric smooth muscle cell CL0002504
    CSI 1.67
    rCSI 2.38%
    PRS 77.02
  • megakaryocyte CL0000556
    CSI 1.63
    rCSI 7.08%
    PRS 82.87
  • CD4-positive, alpha-beta cytotoxic T cell CL0000934
    CSI 1.6
    rCSI 2.2%
    PRS 91.7
  • granulocyte CL0000094
    CSI 1.55
    rCSI 2.37%
    PRS 83.81
  • muscle cell CL0000187
    CSI 1.46
    rCSI 3%
    PRS 87.17
  • natural T-regulatory cell CL0000903
    CSI 1.43
    rCSI 2.71%
    PRS 95.14
  • enteroendocrine cell CL0000164
    CSI 1.43
    rCSI 1.95%
    PRS 76.03
  • mature alpha-beta T cell CL0000791
    CSI 1.42
    rCSI 5.15%
    PRS 91.37
  • glioblast CL0000030
    CSI 1.42
    rCSI 2.26%
    PRS 67.26
  • bronchus fibroblast of lung CL2000093
    CSI 1.4
    rCSI 1.14%
    PRS 75.45
  • promonocyte CL0000559
    CSI 1.35
    rCSI 2.3%
    PRS 82.69
  • type B pancreatic cell CL0000169
    CSI 1.34
    rCSI 2.96%
    PRS 74.66
  • club cell CL0000158
    CSI 1.32
    rCSI 1.94%
    PRS 70.3
  • large pre-B-II cell CL0000957
    CSI 1.3
    rCSI 3.7%
    PRS 82.64
  • alveolar adventitial fibroblast CL4028006
    CSI 1.29
    rCSI 2.03%
    PRS 77.47
  • CD1c-positive myeloid dendritic cell CL0002399
    CSI 1.21
    rCSI 1.47%
    PRS 83.81
  • pancreatic ductal cell CL0002079
    CSI 1.15
    rCSI 2.24%
    PRS 78.92
  • cytotoxic T cell CL0000910
    CSI 0.2
    rCSI 1.3%
    PRS 81.1%
  • bronchiolar smooth muscle cell CL4033017
    CSI 0.5
    rCSI 7.7%
    PRS 85.9%
  • effector memory CD8-positive, alpha-beta T cell, terminally differentiated CL0001062
    CSI 0.7
    rCSI 3.3%
    PRS 87.5%
  • podocyte CL0000653
    CSI 0.7
    rCSI 3.1%
    PRS 76.0%
  • microcirculation associated smooth muscle cell CL0008035
    CSI 0.7
    rCSI 2.0%
    PRS 75.8%
  • pancreatic stellate cell CL0002410
    CSI 0.8
    rCSI 4.6%
    PRS 81.1%
  • chandelier pvalb GABAergic cortical interneuron CL4023036
    CSI 0.8
    rCSI 2.6%
    PRS 61.2%
  • myeloid lineage restricted progenitor cell CL0000839
    CSI 0.8
    rCSI 4.3%
    PRS 91.5%
  • mammary gland epithelial cell CL0002327
    CSI 0.9
    rCSI 3.2%
    PRS 84.8%
  • germinal center B cell CL0000844
    CSI 0.9
    rCSI 2.7%
    PRS 87.1%
  • primitive red blood cell CL0002355
    CSI 0.9
    rCSI 5.0%
    PRS 83.4%
  • lung macrophage CL1001603
    CSI 0.9
    rCSI 2.1%
    PRS 83.3%
  • L6b glutamatergic cortical neuron CL4023038
    CSI 1.0
    rCSI 3.1%
    PRS 58.7%
  • retinal cone cell CL0000573
    CSI 1.0
    rCSI 1.7%
    PRS 65.3%
  • helper T cell CL0000912
    CSI 1.1
    rCSI 1.5%
    PRS 76.2%
  • pluripotent stem cell CL0002248
    CSI 1.1
    rCSI 34.0%
    PRS 88.3%
  • pancreatic ductal cell CL0002079
    CSI 1.2
    rCSI 2.2%
    PRS 78.9%
  • CD1c-positive myeloid dendritic cell CL0002399
    CSI 1.2
    rCSI 1.5%
    PRS 83.8%
  • alveolar adventitial fibroblast CL4028006
    CSI 1.3
    rCSI 2.0%
    PRS 77.5%
  • large pre-B-II cell CL0000957
    CSI 1.3
    rCSI 3.7%
    PRS 82.6%
  • club cell CL0000158
    CSI 1.3
    rCSI 1.9%
    PRS 70.3%
  • type B pancreatic cell CL0000169
    CSI 1.3
    rCSI 3.0%
    PRS 74.7%
  • promonocyte CL0000559
    CSI 1.4
    rCSI 2.3%
    PRS 82.7%
  • bronchus fibroblast of lung CL2000093
    CSI 1.4
    rCSI 1.1%
    PRS 75.5%
  • glioblast CL0000030
    CSI 1.4
    rCSI 2.3%
    PRS 67.3%
  • mature alpha-beta T cell CL0000791
    CSI 1.4
    rCSI 5.2%
    PRS 91.4%
  • enteroendocrine cell CL0000164
    CSI 1.4
    rCSI 2.0%
    PRS 76.0%
  • natural T-regulatory cell CL0000903
    CSI 1.4
    rCSI 2.7%
    PRS 95.1%
  • muscle cell CL0000187
    CSI 1.5
    rCSI 3.0%
    PRS 87.2%
  • granulocyte CL0000094
    CSI 1.6
    rCSI 2.4%
    PRS 83.8%
  • CD4-positive, alpha-beta cytotoxic T cell CL0000934
    CSI 1.6
    rCSI 2.2%
    PRS 91.7%
  • megakaryocyte CL0000556
    CSI 1.6
    rCSI 7.1%
    PRS 82.9%
  • enteric smooth muscle cell CL0002504
    CSI 1.7
    rCSI 2.4%
    PRS 77.0%
  • intestine goblet cell CL0019031
    CSI 1.7
    rCSI 1.5%
    PRS 73.5%
  • goblet cell CL0000160
    CSI 1.7
    rCSI 1.6%
    PRS 74.7%
  • intestinal tuft cell CL0019032
    CSI 1.7
    rCSI 2.7%
    PRS 79.8%
  • vascular associated smooth muscle cell CL0000359
    CSI 1.8
    rCSI 5.7%
    PRS 74.0%
  • multi-ciliated epithelial cell CL0005012
    CSI 1.8
    rCSI 1.8%
    PRS 69.3%
  • retinal blood vessel endothelial cell CL0002585
    CSI 1.8
    rCSI 2.9%
    PRS 79.5%
  • neuroblast (sensu Vertebrata) CL0000031
    CSI 1.8
    rCSI 2.3%
    PRS 72.0%
  • erythrocyte CL0000232
    CSI 1.8
    rCSI 4.1%
    PRS 77.1%
  • mesodermal cell CL0000222
    CSI 1.8
    rCSI 2.2%
    PRS 73.7%
  • pvalb GABAergic cortical interneuron CL4023018
    CSI 1.8
    rCSI 2.3%
    PRS 54.9%
  • neuroblast (sensu Nematoda and Protostomia) CL0000338
    CSI 1.9
    rCSI 2.1%
    PRS 67.7%
  • ependymal cell CL0000065
    CSI 1.9
    rCSI 3.8%
    PRS 53.7%
  • double-positive, alpha-beta thymocyte CL0000809
    CSI 2.0
    rCSI 2.0%
    PRS 86.1%
  • intermediate monocyte CL0002393
    CSI 2.0
    rCSI 3.0%
    PRS 81.2%
  • ciliated epithelial cell CL0000067
    CSI 2.0
    rCSI 1.8%
    PRS 64.2%
  • ionocyte CL0005006
    CSI 2.0
    rCSI 2.2%
    PRS 76.5%
  • M cell of gut CL0000682
    CSI 2.0
    rCSI 2.2%
    PRS 81.9%
  • placental villous trophoblast CL2000060
    CSI 2.1
    rCSI 3.2%
    PRS 74.7%
  • mature B cell CL0000785
    CSI 2.1
    rCSI 1.8%
    PRS 85.4%
  • keratinocyte CL0000312
    CSI 2.1
    rCSI 1.7%
    PRS 78.9%
  • myoepithelial cell CL0000185
    CSI 2.1
    rCSI 5.2%
    PRS 81.4%
  • stem cell CL0000034
    CSI 2.1
    rCSI 2.0%
    PRS 68.2%
  • alternatively activated macrophage CL0000890
    CSI 2.1
    rCSI 2.6%
    PRS 85.8%
  • retina horizontal cell CL0000745
    CSI 2.1
    rCSI 3.2%
    PRS 72.3%
  • conjunctival epithelial cell CL1000432
    CSI 2.1
    rCSI 3.2%
    PRS 76.0%
  • mucous neck cell CL0000651
    CSI 2.1
    rCSI 3.1%
    PRS 83.7%
  • acinar cell CL0000622
    CSI 2.1
    rCSI 3.1%
    PRS 85.7%
  • group 3 innate lymphoid cell CL0001071
    CSI 2.2
    rCSI 1.6%
    PRS 81.6%
  • radial glial cell CL0000681
    CSI 2.2
    rCSI 3.0%
    PRS 74.3%
  • effector memory CD4-positive, alpha-beta T cell CL0000905
    CSI 2.2
    rCSI 3.0%
    PRS 93.3%
  • common lymphoid progenitor CL0000051
    CSI 2.2
    rCSI 3.0%
    PRS 91.1%
  • fraction A pre-pro B cell CL0002045
    CSI 2.2
    rCSI 2.5%
    PRS 87.7%
  • promyelocyte CL0000836
    CSI 2.2
    rCSI 3.2%
    PRS 82.6%
  • epithelial cell CL0000066
    CSI 2.2
    rCSI 3.5%
    PRS 66.3%
  • hematopoietic multipotent progenitor cell CL0000837
    CSI 2.3
    rCSI 5.4%
    PRS 89.5%
  • megakaryocyte-erythroid progenitor cell CL0000050
    CSI 2.3
    rCSI 2.0%
    PRS 73.5%
  • CD4-positive helper T cell CL0000492
    CSI 2.3
    rCSI 1.7%
    PRS 88.0%
  • sst GABAergic cortical interneuron CL4023017
    CSI 2.3
    rCSI 3.0%
    PRS 58.2%
  • CD8-positive, alpha-beta cytotoxic T cell CL0000794
    CSI 2.3
    rCSI 2.7%
    PRS 90.9%
  • pro-B cell CL0000826
    CSI 2.3
    rCSI 1.9%
    PRS 78.1%
  • plasmablast CL0000980
    CSI 2.3
    rCSI 1.8%
    PRS 81.6%
  • common dendritic progenitor CL0001029
    CSI 2.3
    rCSI 2.9%
    PRS 84.9%
  • extravillous trophoblast CL0008036
    CSI 2.3
    rCSI 2.9%
    PRS 73.3%
  • mucus secreting cell CL0000319
    CSI 2.4
    rCSI 3.7%
    PRS 84.9%
  • endocrine cell CL0000163
    CSI 2.4
    rCSI 12.3%
    PRS 92.3%
  • T follicular helper cell CL0002038
    CSI 2.5
    rCSI 1.9%
    PRS 88.5%
  • hematopoietic stem cell CL0000037
    CSI 2.5
    rCSI 1.7%
    PRS 78.5%
  • immature B cell CL0000816
    CSI 2.6
    rCSI 1.9%
    PRS 87.1%
  • CD8-positive, alpha-beta thymocyte CL0000811
    CSI 2.6
    rCSI 4.0%
    PRS 93.3%
  • epithelial cell of lower respiratory tract CL0002632
    CSI 2.6
    rCSI 2.0%
    PRS 79.1%
  • fallopian tube secretory epithelial cell CL4030006
    CSI 2.7
    rCSI 2.6%
    PRS 75.0%
  • early lymphoid progenitor CL0000936
    CSI 2.7
    rCSI 2.4%
    PRS 80.9%
  • pulmonary ionocyte CL0017000
    CSI 2.7
    rCSI 3.3%
    PRS 82.6%
  • ciliated cell CL0000064
    CSI 2.8
    rCSI 4.5%
    PRS 71.0%
  • class switched memory B cell CL0000972
    CSI 2.8
    rCSI 2.1%
    PRS 88.7%
  • activated CD4-positive, alpha-beta T cell CL0000896
    CSI 2.8
    rCSI 2.6%
    PRS 90.6%
  • pancreatic acinar cell CL0002064
    CSI 2.9
    rCSI 3.8%
    PRS 81.5%
  • pancreatic D cell CL0000173
    CSI 2.9
    rCSI 2.8%
    PRS 78.5%
  • respiratory basal cell CL0002633
    CSI 2.9
    rCSI 3.0%
    PRS 80.4%
  • colon epithelial cell CL0011108
    CSI 2.9
    rCSI 3.1%
    PRS 72.8%
  • ON-bipolar cell CL0000749
    CSI 3.0
    rCSI 4.5%
    PRS 76.1%
  • neural crest cell CL0011012
    CSI 3.0
    rCSI 2.4%
    PRS 63.5%
  • interneuron CL0000099
    CSI 3.2
    rCSI 6.5%
    PRS 65.2%
  • retinal ganglion cell CL0000740
    CSI 3.2
    rCSI 7.1%
    PRS 61.1%
  • activated type II NK T cell CL0000931
    CSI 3.3
    rCSI 3.7%
    PRS 89.3%
  • unswitched memory B cell CL0000970
    CSI 3.4
    rCSI 2.8%
    PRS 89.0%
  • basal cell CL0000646
    CSI 3.5
    rCSI 4.7%
    PRS 74.6%

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Network Configuration

Explore relationships of the current gene. Select an Interaction Source: 'ONTOLOGY' for shared pathways (GO/Reactome) or 'STRING' for protein-protein interactions. Further refine by selecting context genes and comparing Cell Significance Index (CSI) scores between baseline and target cell types and their specific contexts.

Comma-separated if multiple.
Comma-separated if multiple.

Legend:
  • Query Gene
  • Node Color (Target Cell CSI, relative to current network):
    • Very High
    • High
    • Medium
    • Low
    • Very Low
    • CSI N/A
  • Node Size: Proportional to Target Cell CSI magnitude
  • STRING PPI Edge
  • Shared Pathway Edge (ONTOLOGY)

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Other Information

This section provides additional information about the gene, including a description generated by an AI language model and details about associated proteins.

## Summary [ZNHIT3](/details-gene/9326) (Zinc Finger HIT-Type Containing 3) is a protein-coding gene located on chromosome 17q12. It encodes a nuclear and cytoplasmic protein that plays a fundamental role in core cellular processes, including snoRNP assembly, ribosome biogenesis, and the regulation of transcription ([GO:0000492](https://www.ebi.ac.uk/QuickGO/term/GO:0000492), [GO:0006355](https://www.ebi.ac.uk/QuickGO/term/GO:0006355)). It has been identified as a coactivator for nuclear receptors, such as the thyroid hormone receptor and hepatocyte nuclear factor-4-alpha ([Link](https://doi.org/10.1210/mend.9.2.7776974), [Link](https://doi.org/10.2337/diabetes.51.4.910)). Clinically, mutations in [ZNHIT3](/details-gene/9326) are associated with PEHO syndrome ([260565](https://omim.org/entry/260565)), a severe progressive encephalopathy, underscoring its critical role in neuronal development and survival ([Link](https://doi.org/10.1093/brain/awx040)). Expression data reveals a broad but distinct significance pattern, with exceptionally high relevance in [tracheobronchial smooth muscle cell](/details-cell/CL0019019) and notable roles across a spectrum of immune cells, including macrophages and T lymphocytes. ## Cellular Roles and Expression Landscape The expression profile of [ZNHIT3](/details-gene/9326) indicates a crucial role in metabolically active and specialized cell types, with a particularly dominant significance in structural cells of the respiratory system. **Overall**, the gene shows its highest significance in [tracheobronchial smooth muscle cell](/details-cell/CL0019019) (CSI: 15.55), where its contribution is substantially higher than in any other cell type. This suggests a potentially vital, non-redundant function in maintaining the unique physiological state, contractility, or transcriptional programs of airway smooth muscle. Beyond this, [ZNHIT3](/details-gene/9326) demonstrates significant roles across the hematopoietic system, particularly within the myeloid and lymphoid lineages. It is a key gene in [elicited macrophage](/details-cell/CL0000861) (CSI: 6.81) and [CD14-low, CD16-positive monocyte](/details-cell/CL0002396) (CSI: 6.26), suggesting involvement in monocyte-to-macrophage differentiation or the execution of effector functions. The gene is also consistently important across multiple T lymphocyte subtypes, including [CD4-positive, CD25-positive, alpha-beta regulatory T cell](/details-cell/CL0000792) (CSI: 6.21), [effector CD4-positive, alpha-beta T cell](/details-cell/CL0001044) (CSI: 5.51), and [central memory CD4-positive, alpha-beta T cell](/details-cell/CL0000904) (CSI: 4.91). This pattern implies a fundamental role in T cell activation, differentiation, and memory formation, likely tied to the massive scaling of protein synthesis required for these processes. Finally, its significance in [hematopoietic precursor cell](/details-cell/CL0008001), [transit amplifying cell](/details-cell/CL0009010), and specialized neural cells like [rod bipolar cell](/details-cell/CL0000751) highlights a broader role in cellular proliferation, differentiation, and the maintenance of specialized, high-demand cellular machinery. ## Pathways and Molecular Function The annotated functions of [ZNHIT3](/details-gene/9326) position it at the intersection of ribosome biogenesis and transcriptional regulation. Its involvement in 'Box C/D snoRNP assembly' ([GO:0000492](https://www.ebi.ac.uk/QuickGO/term/GO:0000492)) and 'maturation of LSU-rRNA' ([GO:0000463](https://www.ebi.ac.uk/QuickGO/term/GO:0000463)) is critical for producing functional ribosomes, the cell's protein synthesis factories. This function is consistent with its high expression in cells requiring rapid protein production, such as activated immune cells and contractile smooth muscle cells. Concurrently, [ZNHIT3](/details-gene/9326) functions as a transcriptional co-regulator through its ability to bind nuclear receptors like the thyroid hormone receptor ([GO:0046966](https://www.ebi.ac.uk/QuickGO/term/GO:0046966)) ([Link](https://doi.org/10.1210/mend.9.2.7776974)). This dual role suggests that [ZNHIT3](/details-gene/9326) may coordinate the transcriptional output of a cell with its capacity for protein synthesis, acting as a key node for controlling cellular growth, differentiation, and function. Its localization within both the [cytoplasm](/details-cell/GO:0005737) and the [nucleus](/details-cell/GO:0005634) supports this integrated function. The clinical link to PEHO syndrome, which involves cerebellar granule neuron loss, underscores the exquisite sensitivity of the developing nervous system to disruptions in these core molecular processes ([Link](https://doi.org/10.1093/brain/awx040)). ## Research Directions The widespread yet specific expression pattern of [ZNHIT3](/details-gene/9326), combined with its fundamental molecular functions, opens several avenues for future research, particularly in understanding its role outside the context of neurodevelopment. **Proposed Hypotheses:** 1. The exceptionally high significance of [ZNHIT3](/details-gene/9326) in [tracheobronchial smooth muscle cell](/details-cell/CL0019019) suggests it is a critical regulator of airway muscle physiology. We hypothesize that [ZNHIT3](/details-gene/9326) is essential for maintaining the contractile and synthetic phenotype of these cells, and that its dysregulation could be a contributing factor in respiratory diseases characterized by airway remodeling, such as asthma or chronic obstructive pulmonary disease. 2. Given its consistent expression across diverse T cell subsets and macrophages, we hypothesize that [ZNHIT3](/details-gene/9326) acts as a central checkpoint for immune cell activation. Specifically, it may link metabolic sensing (via nuclear receptors) to the large-scale ribosome biogenesis required for effector cell differentiation and cytokine production. **Experimental Approach:** To test the first hypothesis regarding its role in airway smooth muscle, a direct functional investigation is warranted. A compelling experiment would involve: * **Model System:** Primary human tracheobronchial smooth muscle cells cultured *in vitro*. * **Perturbation:** Utilize CRISPR-Cas9 to generate a stable knockout of [ZNHIT3](/details-gene/9326) or siRNA for transient knockdown. * **Phenotypic Analysis:** Assess the impact of [ZNHIT3](/details-gene/9326) loss on key smooth muscle functions. This would include contractility assays (e.g., measuring cell shortening in response to agonists like acetylcholine), proliferation assays, and migration assays. * **Molecular Analysis:** Perform RNA-sequencing to identify the downstream transcriptional programs regulated by [ZNHIT3](/details-gene/9326). Additionally, quantitative proteomics could be used to determine the impact on the cellular protein landscape, directly linking its role in ribosome biogenesis to functional outcomes. **Therapeutic Potential:** As a therapeutic target, [ZNHIT3](/details-gene/9326) presents significant challenges. Since PEHO syndrome is a loss-of-function disorder, therapeutic strategies would necessitate activation or gene replacement, which are complex to implement. Furthermore, its fundamental role in ribosome biogenesis and its broad expression across many healthy tissues suggest that systemic inhibition would likely lead to severe, widespread toxicity. Therefore, [ZNHIT3](/details-gene/9326) is likely a poor candidate for therapies based on inhibition. Its potential may lie in highly targeted gene therapy approaches for PEHO syndrome, though this remains a distant prospect.

Genular Protein ID: 2749279934

Symbol: ZNHI3_HUMAN

Name: Zinc finger HIT domain-containing protein 3

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 11916906

Title: Thyroid hormone receptor interacting protein 3 (trip3) is a novel coactivator of hepatocyte nuclear factor-4alpha.

PubMed ID: 11916906

DOI: 10.2337/diabetes.51.4.910

PubMed ID: 14702039

Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.

PubMed ID: 14702039

DOI: 10.1038/ng1285

PubMed ID: 16625196

Title: DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage.

PubMed ID: 16625196

DOI: 10.1038/nature04689

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 7776974

Title: Two classes of proteins dependent on either the presence or absence of thyroid hormone for interaction with the thyroid hormone receptor.

PubMed ID: 7776974

DOI: 10.1210/mend.9.2.7776974

PubMed ID: 17081983

Title: Global, in vivo, and site-specific phosphorylation dynamics in signaling networks.

PubMed ID: 17081983

DOI: 10.1016/j.cell.2006.09.026

PubMed ID: 18691976

Title: Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle.

PubMed ID: 18691976

DOI: 10.1016/j.molcel.2008.07.007

PubMed ID: 18669648

Title: A quantitative atlas of mitotic phosphorylation.

PubMed ID: 18669648

DOI: 10.1073/pnas.0805139105

PubMed ID: 21406692

Title: System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation.

PubMed ID: 21406692

DOI: 10.1126/scisignal.2001570

PubMed ID: 23186163

Title: Toward a comprehensive characterization of a human cancer cell phosphoproteome.

PubMed ID: 23186163

DOI: 10.1021/pr300630k

PubMed ID: 28335020

Title: ZNHIT3 is defective in PEHO syndrome, a severe encephalopathy with cerebellar granule neuron loss.

PubMed ID: 28335020

DOI: 10.1093/brain/awx040

PubMed ID: 28561026

Title: R2TP/Prefoldin-like component RUVBL1/RUVBL2 directly interacts with ZNHIT2 to regulate assembly of U5 small nuclear ribonucleoprotein.

PubMed ID: 28561026

DOI: 10.1038/ncomms15615

Sequence Information:

  • Length: 155
  • Mass: 17607
  • Checksum: A115FD0AA9321AB0
  • Sequence:
  • MASLKCSTVV CVICLEKPKY RCPACRVPYC SVVCFRKHKE QCNPETRPVE KKIRSALPTK 
    TVKPVENKDD DDSIADFLNS DEEEDRVSLQ NLKNLGESAT LRSLLLNPHL RQLMVNLDQG 
    EDKAKLMRAY MQEPLFVEFA DCCLGIVEPS QNEES