Details for: GLCCI1

Gene ID: 113263

Gene Type:  Protein-coding  - A gene that serves as a template for producing a messenger RNA (mRNA) molecule, which is then translated into a functional protein.

Symbol: GLCCI1

Ensembl ID: ENSG00000106415

Description: glucocorticoid induced 1

Selected Context(s):  Overall

Cell Significance Landscape

Contexts:

Associated with

Significant Cells

Cell Significance Index (CSI) scores for the chosen context(s)

  • lamp5 GABAergic cortical interneuron CL4023011
    CSI 31.05
    rCSI 52.12%
    PRS 45.94
  • pvalb GABAergic cortical interneuron CL4023018
    CSI 29.74
    rCSI 37%
    PRS 44.12
  • L2/3-6 intratelencephalic projecting glutamatergic neuron CL4023040
    CSI 23.13
    rCSI 56.23%
    PRS 44.43
  • sncg GABAergic cortical interneuron CL4023015
    CSI 20.28
    rCSI 32.62%
    PRS 47.88
  • alpha-beta T cell CL0000789
    CSI 19.78
    rCSI 23.18%
    PRS 80.48
  • oligodendrocyte precursor cell CL0002453
    CSI 17.32
    rCSI 38.1%
    PRS 46.98
  • kidney loop of Henle thin ascending limb epithelial cell CL1001107
    CSI 16.88
    rCSI 43.62%
    PRS 59.48
  • L4 intratelencephalic projecting glutamatergic neuron CL4030063
    CSI 16.86
    rCSI 40.32%
    PRS 51.55
  • near-projecting glutamatergic cortical neuron CL4023012
    CSI 16.53
    rCSI 62.47%
    PRS 46.62
  • sst GABAergic cortical interneuron CL4023017
    CSI 16.07
    rCSI 20.72%
    PRS 47.22
  • retinal bipolar neuron CL0000748
    CSI 15.76
    rCSI 29.52%
    PRS 52.66
  • CD4-positive, CD25-positive, alpha-beta regulatory T cell CL0000792
    CSI 14.59
    rCSI 14.33%
    PRS 80.08
  • ionocyte CL0005006
    CSI 14.55
    rCSI 15.6%
    PRS 64.32
  • chandelier pvalb GABAergic cortical interneuron CL4023036
    CSI 13.69
    rCSI 42.8%
    PRS 50.03
  • naive B cell CL0000788
    CSI 13.52
    rCSI 11.59%
    PRS 72.09
  • L2/3 intratelencephalic projecting glutamatergic neuron CL4030059
    CSI 12.46
    rCSI 27.04%
    PRS 52.16
  • L6b glutamatergic cortical neuron CL4023038
    CSI 11.8
    rCSI 36.89%
    PRS 47.6
  • goblet cell CL0000160
    CSI 11.26
    rCSI 10.64%
    PRS 63.88
  • plasmablast CL0000980
    CSI 11.23
    rCSI 8.83%
    PRS 71.22
  • L5 extratelencephalic projecting glutamatergic cortical neuron CL4023041
    CSI 11.07
    rCSI 39.82%
    PRS 44.26
  • VIP GABAergic cortical interneuron CL4023016
    CSI 10.92
    rCSI 13.04%
    PRS 45.76
  • fibroblast of lung CL0002553
    CSI 10.57
    rCSI 9.84%
    PRS 65.13
  • neural crest cell CL0011012
    CSI 10.51
    rCSI 8.3%
    PRS 51.34
  • corticothalamic-projecting glutamatergic cortical neuron CL4023013
    CSI 10.48
    rCSI 61.73%
    PRS 47.07
  • GABAergic amacrine cell CL4030027
    CSI 10.39
    rCSI 35.6%
    PRS 53.01
  • ependymal cell CL0000065
    CSI 10.09
    rCSI 20.48%
    PRS 43.48
  • diffuse bipolar 6 cell CL4033032
    CSI 10.08
    rCSI 52.98%
    PRS 58.55
  • mucosal invariant T cell CL0000940
    CSI 9.4
    rCSI 7.59%
    PRS 75
  • differentiation-committed oligodendrocyte precursor CL4023059
    CSI 9.15
    rCSI 16.63%
    PRS 56.19
  • rod bipolar cell CL0000751
    CSI 9.07
    rCSI 16.29%
    PRS 57.72
  • IgA plasma cell CL0000987
    CSI 8.93
    rCSI 9.14%
    PRS 77.96
  • neuroblast (sensu Vertebrata) CL0000031
    CSI 8.92
    rCSI 11.45%
    PRS 61.48
  • naive thymus-derived CD8-positive, alpha-beta T cell CL0000900
    CSI 8.69
    rCSI 6.11%
    PRS 82.14
  • T follicular helper cell CL0002038
    CSI 8.42
    rCSI 6.3%
    PRS 79.53
  • glioblast CL0000030
    CSI 8.21
    rCSI 13.1%
    PRS 56.84
  • S cone cell CL0003050
    CSI 8.2
    rCSI 36.05%
    PRS 60.85
  • flat midget bipolar cell CL4033033
    CSI 8.14
    rCSI 58.2%
    PRS 57.24
  • CD4-positive, alpha-beta memory T cell CL0000897
    CSI 7.93
    rCSI 5.69%
    PRS 78.61
  • retinal ganglion cell CL0000740
    CSI 7.76
    rCSI 17.14%
    PRS 50.5
  • kidney loop of Henle thin descending limb epithelial cell CL1001111
    CSI 7.73
    rCSI 10.95%
    PRS 60.87
  • diffuse bipolar 3b cell CL4033030
    CSI 7.54
    rCSI 50.05%
    PRS 61.31
  • podocyte CL0000653
    CSI 7.43
    rCSI 33.03%
    PRS 64.38
  • renal alpha-intercalated cell CL0005011
    CSI 7.38
    rCSI 9.86%
    PRS 73.35
  • interneuron CL0000099
    CSI 7.23
    rCSI 14.53%
    PRS 53.5
  • invaginating midget bipolar cell CL4033034
    CSI 7.06
    rCSI 41.72%
    PRS 58.89
  • neuroblast (sensu Nematoda and Protostomia) CL0000338
    CSI 7.02
    rCSI 8.11%
    PRS 57.38
  • placental villous trophoblast CL2000060
    CSI 6.86
    rCSI 10.59%
    PRS 62.95
  • caudal ganglionic eminence derived cortical interneuron CL4023064
    CSI 6.69
    rCSI 11.81%
    PRS 45.03
  • ciliated columnar cell of tracheobronchial tree CL0002145
    CSI 6.68
    rCSI 15.24%
    PRS 60.62
  • kidney interstitial alternatively activated macrophage CL1000695
    CSI 6.53
    rCSI 17.03%
    PRS 64.22
  • Mueller cell CL0000636
    CSI 6.47
    rCSI 14.77%
    PRS 56.08
  • ciliated cell CL0000064
    CSI 6.38
    rCSI 10.34%
    PRS 60.96
  • group 3 innate lymphoid cell CL0001071
    CSI 6.32
    rCSI 4.75%
    PRS 70.19
  • renal beta-intercalated cell CL0002201
    CSI 6.3
    rCSI 15.02%
    PRS 65.07
  • multi-ciliated epithelial cell CL0005012
    CSI 6.17
    rCSI 6.15%
    PRS 57.9
  • epithelial cell of proximal tubule CL0002306
    CSI 6.15
    rCSI 15.01%
    PRS 57.62
  • helper T cell CL0000912
    CSI 5.84
    rCSI 8.26%
    PRS 68.65
  • glycinergic amacrine cell CL4030028
    CSI 5.79
    rCSI 15.08%
    PRS 61.42
  • radial glial cell CL0000681
    CSI 5.78
    rCSI 8.03%
    PRS 62.98
  • endocardial cell CL0002350
    CSI 5.73
    rCSI 27.44%
    PRS 62.69
  • diffuse bipolar 1 cell CL4033027
    CSI 5.69
    rCSI 42.77%
    PRS 57.64
  • erythroblast CL0000765
    CSI 5.64
    rCSI 14.96%
    PRS 75.03
  • plasma cell CL0000786
    CSI 5.55
    rCSI 7.27%
    PRS 87.32
  • precursor B cell CL0000817
    CSI 5.45
    rCSI 4.78%
    PRS 73.65
  • L5/6 near-projecting glutamatergic neuron CL4030067
    CSI 5.43
    rCSI 17.84%
    PRS 51.34
  • epithelial cell of lower respiratory tract CL0002632
    CSI 5.42
    rCSI 4.2%
    PRS 66.95
  • stromal cell CL0000499
    CSI 5.39
    rCSI 15.16%
    PRS 60.97
  • vascular leptomeningeal cell CL4023051
    CSI 5.33
    rCSI 9.34%
    PRS 56.51
  • BEST4+ enteroycte CL4030026
    CSI 5.33
    rCSI 6.62%
    PRS 66.14
  • subcutaneous adipocyte CL0002521
    CSI 5.29
    rCSI 27.11%
    PRS 69.35
  • diffuse bipolar 3a cell CL4033029
    CSI 5.09
    rCSI 34.62%
    PRS 59.44
  • cerebral cortex endothelial cell CL1001602
    CSI 5.01
    rCSI 8.66%
    PRS 54.59
  • neuron CL0000540
    CSI 4.98
    rCSI 13.27%
    PRS 53.71
  • cerebellar granule cell CL0001031
    CSI 4.86
    rCSI 7.15%
    PRS 57.77
  • mature B cell CL0000785
    CSI 4.69
    rCSI 4.08%
    PRS 75.22
  • central nervous system neuron CL2000029
    CSI 4.66
    rCSI 34.28%
    PRS 50.95
  • mesenchymal cell CL0008019
    CSI 4.63
    rCSI 11.75%
    PRS 58.57
  • retinal rod cell CL0000604
    CSI 4.45
    rCSI 7.84%
    PRS 61.09
  • neural cell CL0002319
    CSI 4.43
    rCSI 16.72%
    PRS 50.14
  • CD8-positive, CD28-negative, alpha-beta regulatory T cell CL0000920
    CSI 4.4
    rCSI 8.77%
    PRS 81.1
  • pulmonary ionocyte CL0017000
    CSI 4.33
    rCSI 5.28%
    PRS 71.95
  • lung secretory cell CL1000272
    CSI 4.32
    rCSI 10.68%
    PRS 63.03
  • choroid plexus epithelial cell CL0000706
    CSI 4.3
    rCSI 7.04%
    PRS 53.6
  • adipocyte CL0000136
    CSI 4.29
    rCSI 5.5%
    PRS 56.74
  • hepatic stellate cell CL0000632
    CSI 4.15
    rCSI 15.53%
    PRS 56.4
  • medium spiny neuron CL1001474
    CSI 4.02
    rCSI 34.6%
    PRS 51.54
  • retinal cone cell CL0000573
    CSI 3.96
    rCSI 6.38%
    PRS 54.05
  • inhibitory interneuron CL0000498
    CSI 3.9
    rCSI 9%
    PRS 53.14
  • IgG plasma cell CL0000985
    CSI 3.87
    rCSI 4.64%
    PRS 80.11
  • epicardial adipocyte CL1000309
    CSI 3.87
    rCSI 12.59%
    PRS 64.59
  • mature T cell CL0002419
    CSI 3.81
    rCSI 2.97%
    PRS 81.8
  • kidney loop of Henle thick ascending limb epithelial cell CL1001106
    CSI 3.72
    rCSI 32.16%
    PRS 61.12
  • H2 horizontal cell CL0004218
    CSI 3.63
    rCSI 18.07%
    PRS 61.47
  • effector CD4-positive, alpha-beta T cell CL0001044
    CSI 3.59
    rCSI 10.3%
    PRS 83.8
  • mononuclear phagocyte CL0000113
    CSI 3.58
    rCSI 7.89%
    PRS 68.49
  • cardiac muscle cell CL0000746
    CSI 3.5
    rCSI 5.02%
    PRS 54.07
  • neural progenitor cell CL0011020
    CSI 3.42
    rCSI 15.07%
    PRS 54.66
  • OFFx cell CL4033036
    CSI 3.36
    rCSI 15.81%
    PRS 58.94
  • T-helper 17 cell CL0000899
    CSI 3.35
    rCSI 2.66%
    PRS 84.94
  • OFF-bipolar cell CL0000750
    CSI 3.19
    rCSI 4.36%
    PRS 70.71
  • enteric neuron CL0007011
    CSI 0.2
    rCSI 3.3%
    PRS 77.7%
  • cytotoxic T cell CL0000910
    CSI 0.2
    rCSI 1.3%
    PRS 73.2%
  • respiratory goblet cell CL0002370
    CSI 0.3
    rCSI 3.2%
    PRS 78.4%
  • enteroendocrine cell of small intestine CL0009006
    CSI 0.7
    rCSI 1.4%
    PRS 76.4%
  • neuroplacodal cell CL0000032
    CSI 0.7
    rCSI 6.5%
    PRS 73.6%
  • deuterosomal cell CL4033044
    CSI 0.7
    rCSI 2.4%
    PRS 67.6%
  • regular ventricular cardiac myocyte CL0002131
    CSI 0.8
    rCSI 4.7%
    PRS 56.2%
  • Hofbauer cell CL3000001
    CSI 0.8
    rCSI 1.6%
    PRS 75.0%
  • H1 horizontal cell CL0004217
    CSI 0.9
    rCSI 3.6%
    PRS 63.3%
  • antibody secreting cell CL0000946
    CSI 1.1
    rCSI 4.7%
    PRS 92.5%
  • serotonergic neuron CL0000850
    CSI 1.1
    rCSI 4.9%
    PRS 48.6%
  • central memory CD8-positive, alpha-beta T cell CL0000907
    CSI 1.2
    rCSI 0.8%
    PRS 77.7%
  • keratocyte CL0002363
    CSI 1.2
    rCSI 2.9%
    PRS 71.6%
  • starburst amacrine cell CL0004232
    CSI 1.2
    rCSI 10.3%
    PRS 55.2%
  • cerebellar neuron CL1001611
    CSI 1.3
    rCSI 11.3%
    PRS 51.4%
  • type B pancreatic cell CL0000169
    CSI 1.3
    rCSI 2.9%
    PRS 62.6%
  • neuroendocrine cell CL0000165
    CSI 1.3
    rCSI 5.1%
    PRS 78.4%
  • retinal pigment epithelial cell CL0002586
    CSI 1.4
    rCSI 2.7%
    PRS 61.8%
  • megakaryocyte-erythroid progenitor cell CL0000050
    CSI 1.4
    rCSI 1.3%
    PRS 61.5%
  • regular atrial cardiac myocyte CL0002129
    CSI 1.5
    rCSI 4.7%
    PRS 62.4%
  • lung ciliated cell CL1000271
    CSI 1.6
    rCSI 1.8%
    PRS 54.9%
  • chondrocyte CL0000138
    CSI 1.6
    rCSI 2.5%
    PRS 56.9%
  • alveolar adventitial fibroblast CL4028006
    CSI 1.6
    rCSI 2.6%
    PRS 67.0%
  • blood vessel smooth muscle cell CL0019018
    CSI 1.7
    rCSI 13.5%
    PRS 57.8%
  • common dendritic progenitor CL0001029
    CSI 1.7
    rCSI 2.1%
    PRS 75.0%
  • renal principal cell CL0005009
    CSI 1.8
    rCSI 4.6%
    PRS 67.8%
  • GABAergic neuron CL0000617
    CSI 1.8
    rCSI 6.0%
    PRS 49.3%
  • granulocyte CL0000094
    CSI 1.8
    rCSI 2.8%
    PRS 73.7%
  • ON midget ganglion cell CL4033046
    CSI 1.9
    rCSI 38.0%
    PRS 55.0%
  • conjunctival epithelial cell CL1000432
    CSI 1.9
    rCSI 2.9%
    PRS 65.2%
  • cardiac endothelial cell CL0010008
    CSI 1.9
    rCSI 7.6%
    PRS 63.4%
  • Bergmann glial cell CL0000644
    CSI 1.9
    rCSI 2.6%
    PRS 57.6%
  • GABAergic interneuron CL0011005
    CSI 1.9
    rCSI 30.5%
    PRS 69.0%
  • cerebral cortex pyramidal neuron CL4023111
    CSI 2.0
    rCSI 12.1%
    PRS 77.7%
  • small intestine goblet cell CL1000495
    CSI 2.0
    rCSI 4.4%
    PRS 72.3%
  • glutamatergic neuron CL0000679
    CSI 2.0
    rCSI 4.1%
    PRS 54.3%
  • basophil CL0000767
    CSI 2.1
    rCSI 4.4%
    PRS 81.0%
  • intestinal tuft cell CL0019032
    CSI 2.1
    rCSI 3.2%
    PRS 68.7%
  • ON parasol ganglion cell CL4033052
    CSI 2.1
    rCSI 29.5%
    PRS 55.4%
  • pulmonary alveolar type 1 cell CL0002062
    CSI 2.1
    rCSI 12.0%
    PRS 62.9%
  • kidney distal convoluted tubule epithelial cell CL1000849
    CSI 2.1
    rCSI 22.2%
    PRS 62.6%
  • brain vascular cell CL4023072
    CSI 2.1
    rCSI 22.1%
    PRS 58.1%
  • airway submucosal gland duct basal cell CL4033024
    CSI 2.2
    rCSI 14.0%
    PRS 73.5%
  • hepatocyte CL0000182
    CSI 2.2
    rCSI 4.0%
    PRS 63.7%
  • lung neuroendocrine cell CL1000223
    CSI 2.2
    rCSI 3.3%
    PRS 69.7%
  • brush cell of tracheobronchial tree CL0002075
    CSI 2.3
    rCSI 6.7%
    PRS 74.2%
  • glial cell CL0000125
    CSI 2.3
    rCSI 8.6%
    PRS 55.1%
  • respiratory suprabasal cell CL4033048
    CSI 2.3
    rCSI 2.9%
    PRS 69.3%
  • diffuse bipolar 4 cell CL4033031
    CSI 2.3
    rCSI 26.3%
    PRS 55.1%
  • midbrain dopaminergic neuron CL2000097
    CSI 2.3
    rCSI 14.9%
    PRS 65.3%
  • astrocyte of the cerebral cortex CL0002605
    CSI 2.3
    rCSI 5.3%
    PRS 46.6%
  • epithelial cell of lung CL0000082
    CSI 2.4
    rCSI 2.0%
    PRS 64.0%
  • pulmonary alveolar type 2 cell CL0002063
    CSI 2.4
    rCSI 3.7%
    PRS 71.6%
  • dopaminergic neuron CL0000700
    CSI 2.4
    rCSI 13.8%
    PRS 49.6%
  • amacrine cell CL0000561
    CSI 2.5
    rCSI 7.1%
    PRS 54.0%
  • parietal epithelial cell CL1000452
    CSI 2.5
    rCSI 6.6%
    PRS 55.5%
  • small pre-B-II cell CL0000954
    CSI 2.5
    rCSI 2.4%
    PRS 84.8%
  • extravillous trophoblast CL0008036
    CSI 2.5
    rCSI 3.1%
    PRS 61.2%
  • kidney collecting duct intercalated cell CL1001432
    CSI 2.6
    rCSI 18.8%
    PRS 64.3%
  • pancreatic D cell CL0000173
    CSI 2.7
    rCSI 2.6%
    PRS 67.2%
  • OFF midget ganglion cell CL4033047
    CSI 2.7
    rCSI 54.6%
    PRS 56.6%
  • cerebral cortex neuron CL0010012
    CSI 2.7
    rCSI 11.2%
    PRS 58.2%
  • indirect pathway medium spiny neuron CL4023029
    CSI 2.8
    rCSI 66.3%
    PRS 45.8%
  • direct pathway medium spiny neuron CL4023026
    CSI 2.8
    rCSI 66.5%
    PRS 45.0%
  • mesodermal cell CL0000222
    CSI 2.8
    rCSI 3.4%
    PRS 62.6%
  • kidney connecting tubule epithelial cell CL1000768
    CSI 2.9
    rCSI 7.2%
    PRS 53.9%
  • ciliated epithelial cell CL0000067
    CSI 2.9
    rCSI 2.6%
    PRS 52.4%
  • effector memory CD8-positive, alpha-beta T cell CL0000913
    CSI 2.9
    rCSI 2.6%
    PRS 78.8%
  • renal interstitial pericyte CL1001318
    CSI 3.1
    rCSI 8.4%
    PRS 59.8%
  • ON-bipolar cell CL0000749
    CSI 3.1
    rCSI 4.6%
    PRS 65.9%
  • diffuse bipolar 2 cell CL4033028
    CSI 3.1
    rCSI 24.2%
    PRS 60.8%
  • OFF-bipolar cell CL0000750
    CSI 3.2
    rCSI 4.4%
    PRS 70.7%
  • T-helper 17 cell CL0000899
    CSI 3.4
    rCSI 2.7%
    PRS 84.9%
  • OFFx cell CL4033036
    CSI 3.4
    rCSI 15.8%
    PRS 58.9%
  • neural progenitor cell CL0011020
    CSI 3.4
    rCSI 15.1%
    PRS 54.7%
  • cardiac muscle cell CL0000746
    CSI 3.5
    rCSI 5.0%
    PRS 54.1%
  • mononuclear phagocyte CL0000113
    CSI 3.6
    rCSI 7.9%
    PRS 68.5%
  • effector CD4-positive, alpha-beta T cell CL0001044
    CSI 3.6
    rCSI 10.3%
    PRS 83.8%
  • H2 horizontal cell CL0004218
    CSI 3.6
    rCSI 18.1%
    PRS 61.5%
  • kidney loop of Henle thick ascending limb epithelial cell CL1001106
    CSI 3.7
    rCSI 32.2%
    PRS 61.1%
  • mature T cell CL0002419
    CSI 3.8
    rCSI 3.0%
    PRS 81.8%
  • epicardial adipocyte CL1000309
    CSI 3.9
    rCSI 12.6%
    PRS 64.6%
  • IgG plasma cell CL0000985
    CSI 3.9
    rCSI 4.6%
    PRS 80.1%
  • inhibitory interneuron CL0000498
    CSI 3.9
    rCSI 9.0%
    PRS 53.1%
  • retinal cone cell CL0000573
    CSI 4.0
    rCSI 6.4%
    PRS 54.1%
  • medium spiny neuron CL1001474
    CSI 4.0
    rCSI 34.6%
    PRS 51.5%
  • hepatic stellate cell CL0000632
    CSI 4.2
    rCSI 15.5%
    PRS 56.4%
  • adipocyte CL0000136
    CSI 4.3
    rCSI 5.5%
    PRS 56.7%
  • choroid plexus epithelial cell CL0000706
    CSI 4.3
    rCSI 7.0%
    PRS 53.6%
  • lung secretory cell CL1000272
    CSI 4.3
    rCSI 10.7%
    PRS 63.0%
  • pulmonary ionocyte CL0017000
    CSI 4.3
    rCSI 5.3%
    PRS 72.0%
  • CD8-positive, CD28-negative, alpha-beta regulatory T cell CL0000920
    CSI 4.4
    rCSI 8.8%
    PRS 81.1%
  • neural cell CL0002319
    CSI 4.4
    rCSI 16.7%
    PRS 50.1%
  • retinal rod cell CL0000604
    CSI 4.5
    rCSI 7.8%
    PRS 61.1%
  • mesenchymal cell CL0008019
    CSI 4.6
    rCSI 11.8%
    PRS 58.6%
  • central nervous system neuron CL2000029
    CSI 4.7
    rCSI 34.3%
    PRS 51.0%
  • mature B cell CL0000785
    CSI 4.7
    rCSI 4.1%
    PRS 75.2%
  • cerebellar granule cell CL0001031
    CSI 4.9
    rCSI 7.2%
    PRS 57.8%
  • neuron CL0000540
    CSI 5.0
    rCSI 13.3%
    PRS 53.7%
  • cerebral cortex endothelial cell CL1001602
    CSI 5.0
    rCSI 8.7%
    PRS 54.6%

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Network Configuration

Explore relationships of the current gene. Select an Interaction Source: 'ONTOLOGY' for shared pathways (GO/Reactome) or 'STRING' for protein-protein interactions. Further refine by selecting context genes and comparing Cell Significance Index (CSI) scores between baseline and target cell types and their specific contexts.

Comma-separated if multiple.
Comma-separated if multiple.

Legend:
  • Query Gene
  • Node Color (Target Cell CSI, relative to current network):
    • Very High
    • High
    • Medium
    • Low
    • Very Low
    • CSI N/A
  • Node Size: Proportional to Target Cell CSI magnitude
  • STRING PPI Edge
  • Shared Pathway Edge (ONTOLOGY)

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Other Information

This section provides additional information about the gene, including a description generated by an AI language model and details about associated proteins.

## Summary [GLCCI1](/details-gene/113263) (Glucocorticoid Induced 1) is a protein-coding gene located on chromosome 7p21.3. As its name suggests, it is induced by glucocorticoids and has been implicated in the response to glucocorticoid therapy [Link](https://doi.org/10.1056/nejmoa0911353). The encoded protein localizes to the [cytoplasm](/details-go/GO:0005737) where it is predicted to be involved in [protein binding](/details-go/GO:0005515). **`Overall`**, expression data reveals a striking bimodal significance for [GLCCI1](/details-gene/113263), with high expression in a wide range of neuronal cell types, particularly cortical interneurons, as well as in key lymphocyte populations, including [alpha-beta T cells](/details-cell/CL0000789) and [naive B cells](/details-cell/CL0000788). This dual expression pattern points towards potentially conserved roles in cellular regulation within both the central nervous and immune systems. ## Cellular Roles and Expression Landscape The expression profile of [GLCCI1](/details-gene/113263) indicates a predominant role in the central nervous system. It shows the highest significance in various subtypes of cortical neurons, including [lamp5 GABAergic cortical interneuron](/details-cell/CL4023011) (CSI: 31.05), [pvalb GABAergic cortical interneuron](/details-cell/CL4023018) (CSI: 29.74), and multiple classes of [intratelencephalic projecting glutamatergic neurons](/details-cell/CL4023040) (CSI up to 23.13). Its presence in [oligodendrocyte precursor cells](/details-cell/CL0002453) and [retinal bipolar neurons](/details-cell/CL0000748) further solidifies its broad importance within neural tissues. Concurrently, [GLCCI1](/details-gene/113263) is a significant transcript in the adaptive immune system. It is highly expressed in [alpha-beta T cells](/details-cell/CL0000789) (CSI: 19.78), [CD4-positive, CD25-positive, alpha-beta regulatory T cells](/details-cell/CL0000792) (CSI: 14.59), and [naive B cells](/details-cell/CL0000788) (CSI: 13.52). This expression pattern is consistent with early reports describing its expression at specific stages of T-cell maturation [Link](https://doi.org/10.1007/s00251-002-0513-1). The gene's responsiveness to glucocorticoids, which are potent immunosuppressants, suggests it may be a key mediator of steroid action within these immune cell populations. Beyond these two major systems, its notable expression in specialized epithelial cells, such as [kidney loop of Henle thin ascending limb epithelial cell](/details-cell/CL1001107), indicates additional, context-specific functions. ## Pathways and Molecular Function Functionally, [GLCCI1](/details-gene/113263) is annotated with a molecular function of [protein binding](/details-go/GO:0005515) and is found within the [cytoplasm](/details-go/GO:0005737). While its precise interaction partners and downstream effects are not fully elucidated, its induction by glucocorticoids places it within the glucocorticoid receptor signaling pathway. This pathway is critical for regulating inflammation, metabolism, and stress responses. A landmark genome-wide association study directly linked polymorphisms in the [GLCCI1](/details-gene/113263) gene to the variability in patient response to inhaled glucocorticoid therapy for asthma [Link](https://doi.org/10.1056/nejmoa0911353). This strongly suggests that [GLCCI1](/details-gene/113263) is not merely a passive marker of glucocorticoid exposure but an active participant in mediating the physiological effects of these hormones, particularly within the context of immune and inflammatory cells. ## Research Directions The dual, high-level expression of [GLCCI1](/details-gene/113263) in both the nervous and immune systems, coupled with its role in glucocorticoid signaling, presents several compelling avenues for future research. The primary challenge is to decipher its specific molecular mechanism and understand how this single gene contributes to distinct processes in such different cellular contexts. Based on the available data, several testable hypotheses can be proposed: 1. Genetic variants in [GLCCI1](/details-gene/113263) that are associated with poor glucocorticoid response in asthma may function by altering the gene's expression level or the stability of its protein product in T-lymphocytes, thereby uncoupling the glucocorticoid receptor from its downstream anti-inflammatory effects. 2. In cortical neurons, [GLCCI1](/details-gene/113263) may function as a key regulator of neuronal homeostasis and plasticity in response to stress, which is often accompanied by elevated systemic glucocorticoid levels. Dysregulation of [GLCCI1](/details-gene/113263) could therefore contribute to the pathophysiology of stress-related neuropsychiatric disorders. A key experiment to test the first hypothesis would be to use a CRISPR-Cas9 base-editing system to introduce asthma-associated SNPs into the [GLCCI1](/details-gene/113263) locus of an immortalized human T-cell line (e.g., Jurkat) or primary human T cells. The resulting cell lines could then be treated with dexamethasone, a synthetic glucocorticoid. The impact of these variants on glucocorticoid-mediated suppression of T-cell activation could be assayed by measuring proliferation and the secretion of key cytokines like IL-2 and IFN-gamma via ELISA following T-cell receptor stimulation. This would provide a direct mechanistic link between genotype and cellular phenotype. From a therapeutic standpoint, [GLCCI1](/details-gene/113263) is more likely a valuable biomarker than a direct drug target. Genotyping for [GLCCI1](/details-gene/113263) variants could be used to stratify asthma patients and predict their response to standard corticosteroid therapy, enabling a more personalized medicine approach [Link](https://doi.org/10.1056/nejmc1112547). While developing a small molecule to enhance [GLCCI1](/details-gene/113263) function (activation) could theoretically overcome steroid resistance, its high expression in the brain raises a significant risk of off-target neurological effects, making such a strategy challenging.

Genular Protein ID: 2736695101

Symbol: GLCI1_HUMAN

Name: Glucocorticoid-induced transcript 1 protein

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 12690205

Title: Human chromosome 7: DNA sequence and biology.

PubMed ID: 12690205

DOI: 10.1126/science.1083423

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 12557054

Title: Two genes, three messengers: hybrid transcript between a gene expressed at specific stages of T-cell and sperm maturation and an unrelated adjacent gene.

PubMed ID: 12557054

DOI: 10.1007/s00251-002-0513-1

PubMed ID: 17081983

Title: Global, in vivo, and site-specific phosphorylation dynamics in signaling networks.

PubMed ID: 17081983

DOI: 10.1016/j.cell.2006.09.026

PubMed ID: 18220336

Title: Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis.

PubMed ID: 18220336

DOI: 10.1021/pr0705441

PubMed ID: 18691976

Title: Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle.

PubMed ID: 18691976

DOI: 10.1016/j.molcel.2008.07.007

PubMed ID: 18669648

Title: A quantitative atlas of mitotic phosphorylation.

PubMed ID: 18669648

DOI: 10.1073/pnas.0805139105

PubMed ID: 19413330

Title: Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach.

PubMed ID: 19413330

DOI: 10.1021/ac9004309

PubMed ID: 19690332

Title: Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions.

PubMed ID: 19690332

DOI: 10.1126/scisignal.2000007

PubMed ID: 20068231

Title: Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis.

PubMed ID: 20068231

DOI: 10.1126/scisignal.2000475

PubMed ID: 21991891

Title: Genomewide association between GLCCI1 and response to glucocorticoid therapy in asthma.

PubMed ID: 21991891

DOI: 10.1056/nejmoa0911353

PubMed ID: 22187997

Title: Genetics of glucocorticoids in asthma.

PubMed ID: 22187997

DOI: 10.1056/nejmc1112547

PubMed ID: 21406692

Title: System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation.

PubMed ID: 21406692

DOI: 10.1126/scisignal.2001570

PubMed ID: 23186163

Title: Toward a comprehensive characterization of a human cancer cell phosphoproteome.

PubMed ID: 23186163

DOI: 10.1021/pr300630k

PubMed ID: 24275569

Title: An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome.

PubMed ID: 24275569

DOI: 10.1016/j.jprot.2013.11.014

Sequence Information:

  • Length: 547
  • Mass: 58024
  • Checksum: 51B6AF7788E8800D
  • Sequence:
  • MSTASSSSSS SSSQTPHPPS QRMRRSAAGS PPAVAAAGSG NGAGGGGGVG CAPAAGAGRL 
    LQPIRATVPY QLLRGSQHSP TRPPVAAAAA SLGSLPGPGA ARGPSPSSPT PPAAAAPAEQ 
    APRAKGRPRR SPESHRRSSS PERRSPGSPV CRADKAKSQQ VRTSSTIRRT SSLDTITGPY 
    LTGQWPRDPH VHYPSCMKDK ATQTPSCWAE EGAEKRSHQR SASWGSADQL KEQIAKLRQQ 
    LQRSKQSSRH SKEKDRQSPL HGNHITISHT QATGSRSVPM PLSNISVPKS SVSRVPCNVE 
    GISPELEKVF IKENNGKEEV SKPLDIPDGR RAPLPAHYRS SSTRSIDTQT PSVQERSSSC 
    SSHSPCVSPF CPPESQDGSP CSTEDLLYDR DKDSGSSSPL PKYASSPKPN NSYMFKREPP 
    EGCERVKVFE EMASRQPISA PLFSCPDKNK VNFIPTGSAF CPVKLLGPLL PASDLMLKNS 
    PNSGQSSALA TLTVEQLSSR VSFTSLSDDT STAGSMEASV QQPSQQQQLL QELQGEDHIS 
    AQNYVII