Details for: SSBP2

Gene ID: 23635

Gene Type:  Protein-coding  - A gene that serves as a template for producing a messenger RNA (mRNA) molecule, which is then translated into a functional protein.

Symbol: SSBP2

Ensembl ID: ENSG00000145687

Description: single stranded DNA binding protein 2

Selected Context(s):  Overall

Cell Significance Landscape

Contexts:

Associated with

Significant Cells

Cell Significance Index (CSI) scores for the chosen context(s)

  • Bergmann glial cell CL0000644
    CSI 61.83
    rCSI 84.61%
    PRS 54.32
  • VIP GABAergic cortical interneuron CL4023016
    CSI 54.01
    rCSI 64.51%
    PRS 42.29
  • pvalb GABAergic cortical interneuron CL4023018
    CSI 52.85
    rCSI 65.75%
    PRS 40.56
  • sncg GABAergic cortical interneuron CL4023015
    CSI 51.94
    rCSI 83.54%
    PRS 44.52
  • ependymal cell CL0000065
    CSI 48.96
    rCSI 99.35%
    PRS 40.13
  • sst GABAergic cortical interneuron CL4023017
    CSI 48.39
    rCSI 62.38%
    PRS 43.72
  • lamp5 GABAergic cortical interneuron CL4023011
    CSI 47.79
    rCSI 80.21%
    PRS 42.47
  • choroid plexus epithelial cell CL0000706
    CSI 45.86
    rCSI 75.09%
    PRS 49.93
  • caudal ganglionic eminence derived cortical interneuron CL4023064
    CSI 43.81
    rCSI 77.37%
    PRS 41.56
  • erythrocyte CL0000232
    CSI 37.95
    rCSI 86.1%
    PRS 64.76
  • retinal bipolar neuron CL0000748
    CSI 33.32
    rCSI 62.4%
    PRS 49
  • CD4-positive, alpha-beta memory T cell CL0000897
    CSI 33.21
    rCSI 23.84%
    PRS 75.14
  • cerebellar granule cell CL0001031
    CSI 31.36
    rCSI 46.11%
    PRS 54.34
  • L2/3-6 intratelencephalic projecting glutamatergic neuron CL4023040
    CSI 30.87
    rCSI 75.02%
    PRS 41.07
  • vascular leptomeningeal cell CL4023051
    CSI 29.09
    rCSI 50.99%
    PRS 52.59
  • glycinergic amacrine cell CL4030028
    CSI 27.18
    rCSI 70.8%
    PRS 58.24
  • T follicular helper cell CL0002038
    CSI 26.41
    rCSI 19.77%
    PRS 75.94
  • L6b glutamatergic cortical neuron CL4023038
    CSI 26.23
    rCSI 81.96%
    PRS 44.1
  • chandelier pvalb GABAergic cortical interneuron CL4023036
    CSI 25.68
    rCSI 80.31%
    PRS 46.62
  • astrocyte CL0000127
    CSI 25.57
    rCSI 54.48%
    PRS 32
  • adipocyte CL0000136
    CSI 25.4
    rCSI 32.62%
    PRS 53.49
  • neuron CL0000540
    CSI 25.39
    rCSI 67.62%
    PRS 49.94
  • goblet cell CL0000160
    CSI 25.38
    rCSI 23.99%
    PRS 60.16
  • late pro-B cell CL0002048
    CSI 25.25
    rCSI 63.27%
    PRS 84.5
  • glioblast CL0000030
    CSI 24.99
    rCSI 39.86%
    PRS 53.34
  • naive thymus-derived CD8-positive, alpha-beta T cell CL0000900
    CSI 24.57
    rCSI 17.25%
    PRS 78.9
  • pro-B cell CL0000826
    CSI 23.98
    rCSI 19.85%
    PRS 62.76
  • neuroblast (sensu Nematoda and Protostomia) CL0000338
    CSI 23.8
    rCSI 27.49%
    PRS 53.89
  • CD4-positive, alpha-beta thymocyte CL0000810
    CSI 23.59
    rCSI 18.89%
    PRS 81.14
  • hematopoietic stem cell CL0000037
    CSI 23.14
    rCSI 15.38%
    PRS 63.75
  • radial glial cell CL0000681
    CSI 23.09
    rCSI 32.07%
    PRS 59.37
  • L2/3 intratelencephalic projecting glutamatergic neuron CL4030059
    CSI 22.37
    rCSI 48.52%
    PRS 48.64
  • renal interstitial pericyte CL1001318
    CSI 22.05
    rCSI 60.78%
    PRS 56.41
  • naive B cell CL0000788
    CSI 21.99
    rCSI 18.86%
    PRS 68.8
  • astrocyte of the cerebral cortex CL0002605
    CSI 21.97
    rCSI 49.26%
    PRS 43.25
  • immature B cell CL0000816
    CSI 21.86
    rCSI 16.24%
    PRS 74.1
  • L5 extratelencephalic projecting glutamatergic cortical neuron CL4023041
    CSI 21.85
    rCSI 78.61%
    PRS 40.9
  • neural crest cell CL0011012
    CSI 21.42
    rCSI 16.93%
    PRS 47.53
  • GABAergic amacrine cell CL4030027
    CSI 21.41
    rCSI 73.33%
    PRS 49.64
  • mucosal invariant T cell CL0000940
    CSI 21.02
    rCSI 16.99%
    PRS 71.17
  • near-projecting glutamatergic cortical neuron CL4023012
    CSI 20.18
    rCSI 76.26%
    PRS 43.28
  • retinal ganglion cell CL0000740
    CSI 19.51
    rCSI 43.1%
    PRS 46.87
  • CD8-positive, alpha-beta memory T cell CL0000909
    CSI 19.46
    rCSI 20.33%
    PRS 82.88
  • hematopoietic precursor cell CL0008001
    CSI 19.18
    rCSI 19.74%
    PRS 77.23
  • keratocyte CL0002363
    CSI 19
    rCSI 45.67%
    PRS 68.45
  • cerebral cortex endothelial cell CL1001602
    CSI 18.85
    rCSI 32.6%
    PRS 50.74
  • large pre-B-II cell CL0000957
    CSI 17.9
    rCSI 51.1%
    PRS 72.5
  • OFFx cell CL4033036
    CSI 17.81
    rCSI 83.79%
    PRS 55.53
  • macroglial cell CL0000126
    CSI 17.52
    rCSI 45.04%
    PRS 60.5
  • mural cell CL0008034
    CSI 17.42
    rCSI 59.02%
    PRS 53.86
  • skin fibroblast CL0002620
    CSI 17.27
    rCSI 14.89%
    PRS 66.3
  • precursor B cell CL0000817
    CSI 17.2
    rCSI 15.07%
    PRS 70.47
  • central nervous system macrophage CL0000878
    CSI 17.17
    rCSI 56.9%
    PRS 64.76
  • activated CD4-positive, alpha-beta T cell CL0000896
    CSI 17.07
    rCSI 15.78%
    PRS 80.24
  • ciliated epithelial cell CL0000067
    CSI 17
    rCSI 14.95%
    PRS 48.47
  • amacrine cell CL0000561
    CSI 16.66
    rCSI 48.28%
    PRS 50.29
  • neuroblast (sensu Vertebrata) CL0000031
    CSI 16.54
    rCSI 21.22%
    PRS 57.87
  • L4 intratelencephalic projecting glutamatergic neuron CL4030063
    CSI 16.44
    rCSI 39.33%
    PRS 47.95
  • cardiac muscle cell CL0000746
    CSI 16.38
    rCSI 23.51%
    PRS 50.51
  • interneuron CL0000099
    CSI 15.99
    rCSI 32.11%
    PRS 49.74
  • myofibroblast cell CL0000186
    CSI 15.97
    rCSI 22.12%
    PRS 61.83
  • Hofbauer cell CL3000001
    CSI 15.8
    rCSI 29.83%
    PRS 71.25
  • H1 horizontal cell CL0004217
    CSI 15.46
    rCSI 61.25%
    PRS 60.15
  • diffuse bipolar 6 cell CL4033032
    CSI 15.33
    rCSI 80.6%
    PRS 55.13
  • keratinocyte CL0000312
    CSI 15.15
    rCSI 12.7%
    PRS 65.07
  • Mueller cell CL0000636
    CSI 15.05
    rCSI 34.35%
    PRS 52.45
  • S cone cell CL0003050
    CSI 14.9
    rCSI 65.47%
    PRS 57.44
  • kidney interstitial alternatively activated macrophage CL1000695
    CSI 14.86
    rCSI 38.74%
    PRS 60.48
  • perivascular cell CL4033054
    CSI 14.61
    rCSI 19.98%
    PRS 66.69
  • H2 horizontal cell CL0004218
    CSI 14.58
    rCSI 72.51%
    PRS 58.3
  • conjunctival epithelial cell CL1000432
    CSI 14.52
    rCSI 22.17%
    PRS 61.24
  • early lymphoid progenitor CL0000936
    CSI 14.5
    rCSI 12.74%
    PRS 66.19
  • neural cell CL0002319
    CSI 14.28
    rCSI 53.88%
    PRS 47.4
  • pulmonary ionocyte CL0017000
    CSI 14.22
    rCSI 17.31%
    PRS 68.15
  • epithelial cell of lung CL0000082
    CSI 14.11
    rCSI 11.7%
    PRS 59.73
  • L5/6 near-projecting glutamatergic neuron CL4030067
    CSI 14.03
    rCSI 46.11%
    PRS 47.62
  • retinal cone cell CL0000573
    CSI 13.99
    rCSI 22.51%
    PRS 50.27
  • myeloid leukocyte CL0000766
    CSI 13.74
    rCSI 12.68%
    PRS 62.16
  • CD4-positive helper T cell CL0000492
    CSI 13.5
    rCSI 10.21%
    PRS 74.58
  • ionocyte CL0005006
    CSI 13.46
    rCSI 14.43%
    PRS 59.98
  • myeloid cell CL0000763
    CSI 13.41
    rCSI 55.25%
    PRS 71.82
  • vascular associated smooth muscle cell CL0000359
    CSI 13.28
    rCSI 43.08%
    PRS 61.32
  • inhibitory interneuron CL0000498
    CSI 13.2
    rCSI 30.48%
    PRS 49.76
  • invaginating midget bipolar cell CL4033034
    CSI 13.17
    rCSI 77.77%
    PRS 55.54
  • kidney loop of Henle thin descending limb epithelial cell CL1001111
    CSI 13.14
    rCSI 18.63%
    PRS 56.87
  • platelet CL0000233
    CSI 13.08
    rCSI 54.28%
    PRS 64.37
  • fibroblast of cardiac tissue CL0002548
    CSI 13.05
    rCSI 62.53%
    PRS 60.7
  • corticothalamic-projecting glutamatergic cortical neuron CL4023013
    CSI 12.93
    rCSI 76.11%
    PRS 43.73
  • mononuclear phagocyte CL0000113
    CSI 12.9
    rCSI 28.4%
    PRS 65
  • naive T cell CL0000898
    CSI 12.78
    rCSI 8.9%
    PRS 75.95
  • diffuse bipolar 3a cell CL4033029
    CSI 12.7
    rCSI 86.43%
    PRS 56.45
  • flat midget bipolar cell CL4033033
    CSI 12.48
    rCSI 89.23%
    PRS 53.81
  • diffuse bipolar 3b cell CL4033030
    CSI 12.47
    rCSI 82.79%
    PRS 57.88
  • rod bipolar cell CL0000751
    CSI 12.37
    rCSI 22.23%
    PRS 53.69
  • plasmablast CL0000980
    CSI 12.16
    rCSI 9.57%
    PRS 67.38
  • alpha-beta T cell CL0000789
    CSI 12.16
    rCSI 14.25%
    PRS 77.16
  • retinal pigment epithelial cell CL0002586
    CSI 11.81
    rCSI 23.45%
    PRS 58.44
  • peripheral nervous system neuron CL2000032
    CSI 11.76
    rCSI 16.03%
    PRS 52.43
  • group 3 innate lymphoid cell CL0001071
    CSI 11.48
    rCSI 8.63%
    PRS 66.2
  • ciliated cell CL0000064
    CSI 11.47
    rCSI 18.58%
    PRS 57.34
  • enteric neuron CL0007011
    CSI 0.2
    rCSI 2.8%
    PRS 75.6%
  • pancreatic stellate cell CL0002410
    CSI 0.4
    rCSI 2.0%
    PRS 69.9%
  • pancreatic PP cell CL0002275
    CSI 0.5
    rCSI 2.1%
    PRS 73.6%
  • group 2 innate lymphoid cell CL0001069
    CSI 0.5
    rCSI 2.9%
    PRS 88.3%
  • cytotoxic T cell CL0000910
    CSI 0.6
    rCSI 3.2%
    PRS 70.3%
  • erythroid progenitor cell CL0000038
    CSI 0.6
    rCSI 3.2%
    PRS 69.9%
  • CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human CL0001074
    CSI 0.6
    rCSI 6.9%
    PRS 86.2%
  • myeloid lineage restricted progenitor cell CL0000839
    CSI 0.7
    rCSI 3.8%
    PRS 82.2%
  • pancreatic acinar cell CL0002064
    CSI 0.8
    rCSI 1.0%
    PRS 67.2%
  • respiratory epithelial cell CL0002368
    CSI 0.9
    rCSI 5.6%
    PRS 87.7%
  • pancreatic ductal cell CL0002079
    CSI 0.9
    rCSI 1.8%
    PRS 63.6%
  • cone retinal bipolar cell CL0000752
    CSI 1.2
    rCSI 15.0%
    PRS 73.5%
  • ventricular cardiac muscle cell CL2000046
    CSI 1.3
    rCSI 4.3%
    PRS 83.0%
  • squamous epithelial cell CL0000076
    CSI 1.3
    rCSI 3.0%
    PRS 64.4%
  • tissue-resident macrophage CL0000864
    CSI 1.4
    rCSI 6.5%
    PRS 77.4%
  • respiratory suprabasal cell CL4033048
    CSI 1.4
    rCSI 1.9%
    PRS 65.5%
  • cell of skeletal muscle CL0000188
    CSI 1.5
    rCSI 16.1%
    PRS 82.0%
  • placental villous trophoblast CL2000060
    CSI 1.6
    rCSI 2.4%
    PRS 58.8%
  • CD8-alpha-alpha-positive, alpha-beta intraepithelial T cell CL0000915
    CSI 1.6
    rCSI 7.2%
    PRS 87.8%
  • neural progenitor cell CL0011020
    CSI 1.6
    rCSI 7.1%
    PRS 51.2%
  • luminal epithelial cell of mammary gland CL0002326
    CSI 1.7
    rCSI 3.1%
    PRS 76.0%
  • pancreatic D cell CL0000173
    CSI 1.7
    rCSI 1.7%
    PRS 63.3%
  • type B pancreatic cell CL0000169
    CSI 1.8
    rCSI 4.0%
    PRS 58.6%
  • kidney distal convoluted tubule epithelial cell CL1000849
    CSI 1.8
    rCSI 19.1%
    PRS 59.1%
  • basal cell of epithelium of trachea CL1000348
    CSI 1.9
    rCSI 13.2%
    PRS 75.2%
  • acinar cell CL0000622
    CSI 2.0
    rCSI 2.9%
    PRS 72.3%
  • pancreatic A cell CL0000171
    CSI 2.0
    rCSI 2.1%
    PRS 64.3%
  • basal-myoepithelial cell of mammary gland CL0002324
    CSI 2.1
    rCSI 4.1%
    PRS 79.3%
  • erythroblast CL0000765
    CSI 2.2
    rCSI 5.8%
    PRS 72.2%
  • megakaryocyte-erythroid progenitor cell CL0000050
    CSI 2.2
    rCSI 2.0%
    PRS 57.4%
  • professional antigen presenting cell CL0000145
    CSI 2.3
    rCSI 7.8%
    PRS 83.3%
  • differentiation-committed oligodendrocyte precursor CL4023059
    CSI 2.3
    rCSI 4.1%
    PRS 52.7%
  • central memory CD8-positive, alpha-beta T cell CL0000907
    CSI 2.3
    rCSI 1.5%
    PRS 73.8%
  • lymphoid lineage restricted progenitor cell CL0000838
    CSI 2.3
    rCSI 9.0%
    PRS 80.8%
  • fibroblast of breast CL4006000
    CSI 2.5
    rCSI 10.4%
    PRS 74.1%
  • basket cell CL0000118
    CSI 2.6
    rCSI 16.5%
    PRS 42.9%
  • mesenchymal stem cell of adipose tissue CL0002570
    CSI 2.6
    rCSI 14.7%
    PRS 71.2%
  • skeletal muscle satellite cell CL0000594
    CSI 2.7
    rCSI 7.9%
    PRS 83.4%
  • stromal cell CL0000499
    CSI 2.7
    rCSI 7.6%
    PRS 57.4%
  • ON-bipolar cell CL0000749
    CSI 2.7
    rCSI 4.0%
    PRS 62.3%
  • myeloid dendritic cell CL0000782
    CSI 2.7
    rCSI 4.0%
    PRS 76.7%
  • airway submucosal gland duct basal cell CL4033024
    CSI 2.8
    rCSI 17.7%
    PRS 70.7%
  • fast muscle cell CL0000190
    CSI 2.8
    rCSI 11.0%
    PRS 63.4%
  • germinal center B cell CL0000844
    CSI 2.9
    rCSI 8.7%
    PRS 78.3%
  • mucus secreting cell CL0000319
    CSI 2.9
    rCSI 4.6%
    PRS 71.8%
  • stromal cell of ovary CL0002132
    CSI 2.9
    rCSI 8.0%
    PRS 73.5%
  • regular ventricular cardiac myocyte CL0002131
    CSI 2.9
    rCSI 18.2%
    PRS 52.6%
  • basophil CL0000767
    CSI 3.0
    rCSI 6.3%
    PRS 78.5%
  • CD14-positive, CD16-positive monocyte CL0002397
    CSI 3.0
    rCSI 4.0%
    PRS 74.4%
  • tendon cell CL0000388
    CSI 3.0
    rCSI 7.9%
    PRS 76.6%
  • alveolar macrophage CL0000583
    CSI 3.1
    rCSI 5.1%
    PRS 66.0%
  • alveolar adventitial fibroblast CL4028006
    CSI 3.1
    rCSI 4.9%
    PRS 62.9%
  • respiratory basal cell CL0002633
    CSI 3.1
    rCSI 3.3%
    PRS 66.2%
  • indirect pathway medium spiny neuron CL4023029
    CSI 3.2
    rCSI 76.1%
    PRS 42.5%
  • direct pathway medium spiny neuron CL4023026
    CSI 3.2
    rCSI 76.3%
    PRS 41.6%
  • mesothelial cell CL0000077
    CSI 3.2
    rCSI 12.5%
    PRS 37.4%
  • stem cell CL0000034
    CSI 3.3
    rCSI 3.2%
    PRS 51.2%
  • Cajal-Retzius cell CL0000695
    CSI 3.4
    rCSI 26.3%
    PRS 72.5%
  • skeletal muscle satellite stem cell CL0008011
    CSI 3.4
    rCSI 15.2%
    PRS 78.1%
  • mesenchymal stem cell CL0000134
    CSI 3.4
    rCSI 37.6%
    PRS 73.4%
  • ON midget ganglion cell CL4033046
    CSI 3.4
    rCSI 70.1%
    PRS 51.7%
  • OFF midget ganglion cell CL4033047
    CSI 3.5
    rCSI 70.3%
    PRS 52.9%
  • ciliated columnar cell of tracheobronchial tree CL0002145
    CSI 3.6
    rCSI 8.1%
    PRS 57.1%
  • hematopoietic multipotent progenitor cell CL0000837
    CSI 3.7
    rCSI 8.9%
    PRS 78.5%
  • eye photoreceptor cell CL0000287
    CSI 3.8
    rCSI 42.2%
    PRS 79.3%
  • CD1c-positive myeloid dendritic cell CL0002399
    CSI 3.8
    rCSI 4.5%
    PRS 69.5%
  • adventitial cell CL0002503
    CSI 3.8
    rCSI 9.0%
    PRS 69.3%
  • endocardial cell CL0002350
    CSI 3.9
    rCSI 18.7%
    PRS 59.5%
  • kidney loop of Henle thick ascending limb epithelial cell CL1001106
    CSI 4.0
    rCSI 34.8%
    PRS 58.2%
  • forebrain radial glial cell CL0013000
    CSI 4.1
    rCSI 13.0%
    PRS 65.9%
  • GABAergic interneuron CL0011005
    CSI 4.1
    rCSI 64.9%
    PRS 65.6%
  • OFF-bipolar cell CL0000750
    CSI 4.2
    rCSI 5.7%
    PRS 67.7%
  • cerebellar neuron CL1001611
    CSI 4.3
    rCSI 37.4%
    PRS 47.5%
  • small intestine goblet cell CL1000495
    CSI 4.3
    rCSI 9.3%
    PRS 68.9%
  • mature B cell CL0000785
    CSI 4.3
    rCSI 3.7%
    PRS 71.5%
  • cardiac blood vessel endothelial cell CL0010006
    CSI 4.3
    rCSI 30.6%
    PRS 52.7%
  • innate lymphoid cell CL0001065
    CSI 4.3
    rCSI 9.0%
    PRS 62.7%
  • primordial germ cell CL0000670
    CSI 4.4
    rCSI 21.8%
    PRS 89.0%
  • megakaryocyte CL0000556
    CSI 4.4
    rCSI 19.0%
    PRS 73.3%
  • serotonergic neuron CL0000850
    CSI 4.4
    rCSI 19.6%
    PRS 44.7%
  • lung neuroendocrine cell CL1000223
    CSI 4.4
    rCSI 6.6%
    PRS 66.0%
  • brain vascular cell CL4023072
    CSI 4.5
    rCSI 46.2%
    PRS 54.1%
  • effector CD4-positive, alpha-beta T cell CL0001044
    CSI 4.5
    rCSI 13.0%
    PRS 80.4%
  • mature T cell CL0002419
    CSI 4.5
    rCSI 3.5%
    PRS 78.6%
  • BEST4+ enteroycte CL4030026
    CSI 4.6
    rCSI 5.7%
    PRS 62.5%
  • progenitor cell CL0011026
    CSI 4.6
    rCSI 9.8%
    PRS 60.2%
  • erythroid lineage cell CL0000764
    CSI 4.6
    rCSI 29.7%
    PRS 78.5%
  • microcirculation associated smooth muscle cell CL0008035
    CSI 4.6
    rCSI 13.4%
    PRS 62.2%
  • hepatocyte CL0000182
    CSI 4.7
    rCSI 8.4%
    PRS 59.8%
  • podocyte CL0000653
    CSI 4.7
    rCSI 20.8%
    PRS 60.1%
  • endothelial cell of pericentral hepatic sinusoid CL0019022
    CSI 4.7
    rCSI 14.6%
    PRS 69.6%
  • glial cell CL0000125
    CSI 4.8
    rCSI 18.3%
    PRS 51.6%
  • dopaminergic neuron CL0000700
    CSI 4.9
    rCSI 27.5%
    PRS 45.7%
  • class switched memory B cell CL0000972
    CSI 4.9
    rCSI 3.6%
    PRS 77.5%
  • endothelial cell of placenta CL0009092
    CSI 4.9
    rCSI 24.0%
    PRS 71.8%
  • glandular epithelial cell CL0000150
    CSI 4.9
    rCSI 12.9%
    PRS 79.3%
  • blood vessel smooth muscle cell CL0019018
    CSI 4.9
    rCSI 40.2%
    PRS 53.9%
  • lung macrophage CL1001603
    CSI 5.0
    rCSI 11.1%
    PRS 68.5%
  • pulmonary alveolar type 1 cell CL0002062
    CSI 5.0
    rCSI 28.8%
    PRS 59.4%
  • tracheobronchial smooth muscle cell CL0019019
    CSI 5.0
    rCSI 8.8%
    PRS 69.0%

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Network Configuration

Explore relationships of the current gene. Select an Interaction Source: 'ONTOLOGY' for shared pathways (GO/Reactome) or 'STRING' for protein-protein interactions. Further refine by selecting context genes and comparing Cell Significance Index (CSI) scores between baseline and target cell types and their specific contexts.

Comma-separated if multiple.
Comma-separated if multiple.

Legend:
  • Query Gene
  • Node Color (Target Cell CSI, relative to current network):
    • Very High
    • High
    • Medium
    • Low
    • Very Low
    • CSI N/A
  • Node Size: Proportional to Target Cell CSI magnitude
  • STRING PPI Edge
  • Shared Pathway Edge (ONTOLOGY)

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Other Information

This section provides additional information about the gene, including a description generated by an AI language model and details about associated proteins.

## Summary [SSBP2](/details-gene/23635) (Single Stranded DNA Binding Protein 2) is a protein-coding gene located on chromosome 5q14.1. Functionally, it is characterized as a single-stranded DNA binding protein involved in the positive regulation of transcription by RNA polymerase II. Expression data indicates that **Overall**, [SSBP2](/details-gene/23635) is a highly significant gene in the central nervous system, showing prominent expression in a diverse range of specialized neural cells, including [Bergmann glial cell](/details-cell/CL0000644), various GABAergic cortical interneurons, and [ependymal cell](/details-cell/CL0000065). Its molecular function suggests a role in modulating gene expression programs that are critical for establishing and maintaining the identity of these specific cell lineages. The gene was initially identified and characterized through large-scale cDNA sequencing efforts aimed at cataloging human genes and proteins ([Link](https://doi.org/10.1101/gr.gr1547r), [Link](https://doi.org/10.1038/ng1285)). ## Cellular Roles and Expression Landscape The expression profile of [SSBP2](/details-gene/23635) points to a primary role within the central nervous system. The **Overall** context shows its highest significance in glial and neuronal populations. It is the most significant marker for [Bergmann glial cell](/details-cell/CL0000644) (CSI: 61.83), a specialized astrocyte of the cerebellum essential for neuronal guidance and synaptic function. Furthermore, [SSBP2](/details-gene/23635) shows high significance across multiple subtypes of inhibitory interneurons, including [VIP GABAergic cortical interneuron](/details-cell/CL4023016) (CSI: 54.01), [pvalb GABAergic cortical interneuron](/details-cell/CL4023018) (CSI: 52.85), and [sst GABAergic cortical interneuron](/details-cell/CL4023017) (CSI: 48.39). Beyond neurons and glia, [SSBP2](/details-gene/23635) is also prominently expressed in other CNS-associated epithelial cells, such as [ependymal cell](/details-cell/CL0000065) and [choroid plexus epithelial cell](/details-cell/CL0000706), which line the ventricles and produce cerebrospinal fluid, respectively. This broad but specific expression pattern across functionally diverse neural cell types suggests [SSBP2](/details-gene/23635) may be a key transcriptional regulator involved in maintaining the mature, differentiated state of these cells. Interestingly, notable expression is also observed outside the CNS in cell types such as [erythrocyte](/details-cell/CL0000232) and [CD4-positive, alpha-beta memory T cell](/details-cell/CL0000897), suggesting potential moonlighting functions beyond its primary role in neural transcription. ## Pathways and Molecular Function [SSBP2](/details-gene/23635) is annotated with key molecular functions that underpin its biological role. As its name implies, it exhibits [single-stranded dna binding](/details-gene/23635/details-go/GO:0003697) activity, a function first hypothesized for this conserved gene family ([Link](https://doi.org/10.1006/geno.2002.6805)). This is complemented by its capacity for [protein binding](/details-gene/23635/details-go/GO:0005515), suggesting it acts as part of larger protein complexes to regulate cellular processes. Consistent with its localization in both the [nucleus](/details-gene/23635/details-go/GO:0005634) and [cytoplasm](/details-gene/23635/details-go/GO:0005737), its primary annotated biological process is the [positive regulation of transcription by rna polymerase ii](/details-gene/23635/details-go/GO:0045944). This function is highly consistent with its expression pattern, where it likely contributes to the unique transcriptional programs that define the diverse and highly specialized neural cell types in which it is most active. Its role as a transcriptional regulator may be crucial for maintaining cellular homeostasis and function in the brain. ## Research Directions The widespread and high-level expression of [SSBP2](/details-gene/23635) across numerous, terminally differentiated neural cell types raises important questions about its role in CNS maintenance and potential involvement in neurological disorders. ### Proposed Hypotheses 1. **Hypothesis 1:** [SSBP2](/details-gene/23635) acts as a crucial maintenance factor in the central nervous system. Its high expression in diverse but specific cell types (e.g., [Bergmann glial cell](/details-cell/CL0000644), GABAergic interneurons) suggests it regulates a core set of genes essential for preserving the identity and function of these mature cells, and its dysregulation could contribute to neurodegenerative processes. 2. **Hypothesis 2:** The significant expression of [SSBP2](/details-gene/23635) in mature, anucleated [erythrocyte](/details-cell/CL0000232) points to a non-canonical, extranuclear function. In this context, [SSBP2](/details-gene/23635) may bind to RNA or participate in protein-protein interactions to regulate processes like mRNA stability, translation, or cytoskeletal integrity, which are critical for the erythrocyte lifespan. ### Key Experimental Approach To test the first hypothesis regarding its role as a cellular maintenance factor, a conditional knockout (cKO) mouse model could be employed. By crossing an *Ssbp2*-floxed mouse with a cell-type-specific Cre-driver line (e.g., a Pvalb-Cre line to target [pvalb GABAergic cortical interneuron](/details-cell/CL4023018)), one could ablate [SSBP2](/details-gene/23635) in a specific adult cell population. The resulting phenotype could be analyzed using a combination of single-cell RNA sequencing (scRNA-seq) to identify changes in the cellular transcriptome, electrophysiology to assess neuronal function, and immunohistochemistry to observe morphological or cell survival defects. This would directly test whether [SSBP2](/details-gene/23635) is required to maintain the molecular and functional identity of these neurons in vivo. ### Therapeutic Potential As an intracellular DNA-binding protein involved in fundamental transcriptional processes, [SSBP2](/details-gene/23635) is a challenging therapeutic target for small molecule inhibition due to potential off-target effects and the difficulty of targeting protein-DNA interactions. Its broad expression across many vital CNS cell types suggests that systemic inhibition could lead to significant neurotoxicity. Currently, there is insufficient evidence linking [SSBP2](/details-gene/23635) overexpression or aberrant activity to a specific disease. Therefore, its therapeutic potential remains low. It is more likely to serve as a valuable marker for specific neural populations or as a subject of basic research to understand the transcriptional maintenance of neural cell identity.

Genular Protein ID: 3998251845

Symbol: SSBP2_HUMAN

Name: Single-stranded DNA-binding protein 2

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 12079286

Title: A novel, evolutionarily conserved gene family with putative sequence-specific single-stranded DNA-binding activity.

PubMed ID: 12079286

DOI: 10.1006/geno.2002.6805

PubMed ID: 10931946

Title: Gene expression profiling in the human hypothalamus-pituitary-adrenal axis and full-length cDNA cloning.

PubMed ID: 10931946

DOI: 10.1073/pnas.160270997

PubMed ID: 11230166

Title: Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs.

PubMed ID: 11230166

DOI: 10.1101/gr.gr1547r

PubMed ID: 14702039

Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.

PubMed ID: 14702039

DOI: 10.1038/ng1285

PubMed ID: 17974005

Title: The full-ORF clone resource of the German cDNA consortium.

PubMed ID: 17974005

DOI: 10.1186/1471-2164-8-399

PubMed ID: 15372022

Title: The DNA sequence and comparative analysis of human chromosome 5.

PubMed ID: 15372022

DOI: 10.1038/nature02919

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 19690332

Title: Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions.

PubMed ID: 19690332

DOI: 10.1126/scisignal.2000007

PubMed ID: 21269460

Title: Initial characterization of the human central proteome.

PubMed ID: 21269460

DOI: 10.1186/1752-0509-5-17

PubMed ID: 22814378

Title: N-terminal acetylome analyses and functional insights of the N-terminal acetyltransferase NatB.

PubMed ID: 22814378

DOI: 10.1073/pnas.1210303109

PubMed ID: 23186163

Title: Toward a comprehensive characterization of a human cancer cell phosphoproteome.

PubMed ID: 23186163

DOI: 10.1021/pr300630k

Sequence Information:

  • Length: 361
  • Mass: 37828
  • Checksum: EC6F9B08EBFF673A
  • Sequence:
  • MYGKGKSNSS AVPSDSQARE KLALYVYEYL LHVGAQKSAQ TFLSEIRWEK NITLGEPPGF 
    LHSWWCVFWD LYCAAPERRE TCEHSSEAKA FHDYSAAAAP SPVLGNIPPG DGMPVGPVPP 
    GFFQPFMSPR YPGGPRPPLR IPNQALGGVP GSQPLLPSGM DPTRQQGHPN MGGPMQRMTP 
    PRGMVPLGPQ NYGGAMRPPL NALGGPGMPG MNMGPGGGRP WPNPTNANSI PYSSASPGNY 
    VGPPGGGGPP GTPIMPSPAD STNSGDNMYT LMNAVPPGPN RPNFPMGPGS DGPMGGLGGM 
    ESHHMNGSLG SGDMDSISKN SPNNMSLSNQ PGTPRDDGEM GGNFLNPFQS ESYSPSMTMS 
    V

Genular Protein ID: 495676621

Symbol: A0A087X159_HUMAN

Name: N/A

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 11237011

Title: Initial sequencing and analysis of the human genome.

PubMed ID: 11237011

DOI: 10.1038/35057062

PubMed ID: 15372022

Title: The DNA sequence and comparative analysis of human chromosome 5.

PubMed ID: 15372022

DOI: 10.1038/nature02919

PubMed ID: 15496913

Title: Finishing the euchromatic sequence of the human genome.

PubMed ID: 15496913

DOI: 10.1038/nature03001

PubMed ID: 19690332

Title: Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions.

PubMed ID: 19690332

DOI: 10.1126/scisignal.2000007

PubMed ID: 21269460

Title: Initial characterization of the human central proteome.

PubMed ID: 21269460

DOI: 10.1186/1752-0509-5-17

PubMed ID: 22814378

Title: N-terminal acetylome analyses and functional insights of the N-terminal acetyltransferase NatB.

PubMed ID: 22814378

DOI: 10.1073/pnas.1210303109

PubMed ID: 23186163

Title: Toward a comprehensive characterization of a human cancer cell phosphoproteome.

PubMed ID: 23186163

Sequence Information:

  • Length: 369
  • Mass: 38755
  • Checksum: 1DDB6F33B471E6B8
  • Sequence:
  • MYGKGKSNSS AVPSDSQARE KLALYVYEYL LHVGAQKSAQ TFLSEIRWEK NITLGEPPGF 
    LHSWWCVFWD LYCAAPERRE TCEHSSEAKA FHDYSAAAAP SPVLGNIPPG DGMPVGPVPP 
    GFFQPFMSPR YPGGPRPPLR IPNQALGGVP GSQPLLPSGM DPTRQQGHPN MGGPMQRMTP 
    PRGMVPLGPQ SDPWLSLQNY GGAMRPPLNA LGGPGMPGMN MGPGGGRPWP NPTNANSIPY 
    SSASPGNYVG PPGGGGPPGT PIMPSPADST NSGDNMYTLM NAVPPGPNRP NFPMGPGSDG 
    PMGGLGGMES HHMNGSLGSG DMDSISKNSP NNMSLSNQPG TPRDDGEMGG NFLNPFQSES 
    YSPSMTMSV