Details for: RNF130

Gene ID: 55819

Gene Type:  Protein-coding  - A gene that serves as a template for producing a messenger RNA (mRNA) molecule, which is then translated into a functional protein.

Symbol: RNF130

Ensembl ID: ENSG00000113269

Description: ring finger protein 130

Cell Significance Landscape

Associated with

Significant Cells

Cell Significance Index (CSI) scores for the chosen context(s)

  • CD14-low, CD16-positive monocyte CL0002396
    CSI 74.15
    rCSI 57.13%
    PRS 39.3
  • elicited macrophage CL0000861
    CSI 64.67
    rCSI 59.38%
    PRS 47.69
  • myeloid leukocyte CL0000766
    CSI 57.86
    rCSI 53.38%
    PRS 41.78
  • lamp5 GABAergic cortical interneuron CL4023011
    CSI 47.81
    rCSI 80.25%
    PRS 26.58
  • pvalb GABAergic cortical interneuron CL4023018
    CSI 44.06
    rCSI 54.81%
    PRS 25.18
  • VIP GABAergic cortical interneuron CL4023016
    CSI 43.88
    rCSI 52.42%
    PRS 26.51
  • plasmacytoid dendritic cell, human CL0001058
    CSI 43.63
    rCSI 30.46%
    PRS 42.4
  • caudal ganglionic eminence derived cortical interneuron CL4023064
    CSI 42.97
    rCSI 75.89%
    PRS 25.65
  • neuroblast (sensu Nematoda and Protostomia) CL0000338
    CSI 42.14
    rCSI 48.66%
    PRS 35.67
  • sncg GABAergic cortical interneuron CL4023015
    CSI 41.83
    rCSI 67.28%
    PRS 28.6
  • hematopoietic stem cell CL0000037
    CSI 37.28
    rCSI 24.78%
    PRS 44.82
  • intestine goblet cell CL0019031
    CSI 36.47
    rCSI 32.37%
    PRS 40.01
  • neural crest cell CL0011012
    CSI 35.85
    rCSI 28.34%
    PRS 29.6
  • Hofbauer cell CL3000001
    CSI 35.39
    rCSI 66.8%
    PRS 50.3
  • intermediate monocyte CL0002393
    CSI 33.65
    rCSI 50.77%
    PRS 42.44
  • radial glial cell CL0000681
    CSI 31.64
    rCSI 43.95%
    PRS 40.37
  • myeloid dendritic cell CL0000782
    CSI 30.59
    rCSI 44.31%
    PRS 56.47
  • L2/3-6 intratelencephalic projecting glutamatergic neuron CL4023040
    CSI 30.21
    rCSI 73.43%
    PRS 25.8
  • CD1c-positive myeloid dendritic cell CL0002399
    CSI 29.91
    rCSI 36.12%
    PRS 47.9
  • basophil CL0000767
    CSI 28.62
    rCSI 60.55%
    PRS 62.01
  • L6b glutamatergic cortical neuron CL4023038
    CSI 28.23
    rCSI 88.21%
    PRS 27.68
  • megakaryocyte-erythroid progenitor cell CL0000050
    CSI 28.22
    rCSI 25.48%
    PRS 37.49
  • conventional dendritic cell CL0000990
    CSI 27.69
    rCSI 23.12%
    PRS 62.8
  • classical monocyte CL0000860
    CSI 27.57
    rCSI 40.87%
    PRS 84.66
  • enteroendocrine cell CL0000164
    CSI 27.46
    rCSI 37.52%
    PRS 43.37
  • neuroblast (sensu Vertebrata) CL0000031
    CSI 26.02
    rCSI 33.39%
    PRS 38.79
  • sst GABAergic cortical interneuron CL4023017
    CSI 25.94
    rCSI 33.44%
    PRS 27.47
  • glioblast CL0000030
    CSI 25.78
    rCSI 41.13%
    PRS 35.19
  • differentiation-committed oligodendrocyte precursor CL4023059
    CSI 23.02
    rCSI 41.83%
    PRS 35.09
  • promonocyte CL0000559
    CSI 22.88
    rCSI 39.21%
    PRS 49.76
  • oligodendrocyte precursor cell CL0002453
    CSI 22.74
    rCSI 50.05%
    PRS 28.26
  • chandelier pvalb GABAergic cortical interneuron CL4023036
    CSI 21.62
    rCSI 67.63%
    PRS 29.72
  • CD14-positive monocyte CL0001054
    CSI 21.11
    rCSI 26.29%
    PRS 51.73
  • myofibroblast cell CL0000186
    CSI 20.96
    rCSI 29.03%
    PRS 46.33
  • near-projecting glutamatergic cortical neuron CL4023012
    CSI 20.85
    rCSI 78.8%
    PRS 27.46
  • oligodendrocyte CL0000128
    CSI 20.68
    rCSI 61.13%
    PRS 32.53
  • macrophage CL0000235
    CSI 20.41
    rCSI 37.13%
    PRS 70.73
  • alveolar macrophage CL0000583
    CSI 20.1
    rCSI 33.1%
    PRS 46.03
  • CD14-positive, CD16-positive monocyte CL0002397
    CSI 19.86
    rCSI 26.02%
    PRS 53.6
  • cerebral cortex GABAergic interneuron CL0010011
    CSI 19.83
    rCSI 58.54%
    PRS 44.82
  • kidney interstitial alternatively activated macrophage CL1000695
    CSI 19.82
    rCSI 51.66%
    PRS 39.83
  • hepatocyte CL0000182
    CSI 19.13
    rCSI 34.25%
    PRS 39.33
  • central nervous system macrophage CL0000878
    CSI 19.13
    rCSI 63.42%
    PRS 42.44
  • L5 extratelencephalic projecting glutamatergic cortical neuron CL4023041
    CSI 18.57
    rCSI 66.84%
    PRS 25.53
  • common dendritic progenitor CL0001029
    CSI 18.41
    rCSI 23.1%
    PRS 49.98
  • neuron CL0000540
    CSI 17.75
    rCSI 47.27%
    PRS 34.02
  • pulmonary ionocyte CL0017000
    CSI 17.17
    rCSI 20.9%
    PRS 48.07
  • ciliated epithelial cell CL0000067
    CSI 16.84
    rCSI 14.81%
    PRS 30.93
  • cerebellar granule cell CL0001031
    CSI 16.58
    rCSI 24.37%
    PRS 37.42
  • retinal rod cell CL0000604
    CSI 16.57
    rCSI 29.21%
    PRS 39.53
  • hematopoietic precursor cell CL0008001
    CSI 16.34
    rCSI 16.81%
    PRS 57.98
  • pulmonary artery endothelial cell CL1001568
    CSI 15.93
    rCSI 21.67%
    PRS 53.31
  • pancreatic acinar cell CL0002064
    CSI 15.82
    rCSI 21.03%
    PRS 45.1
  • colon macrophage CL0009038
    CSI 15.7
    rCSI 72.53%
    PRS 63.58
  • non-classical monocyte CL0000875
    CSI 15.42
    rCSI 24.72%
    PRS 69.84
  • retina horizontal cell CL0000745
    CSI 15.35
    rCSI 23.39%
    PRS 37.65
  • monocyte CL0000576
    CSI 14.95
    rCSI 27.02%
    PRS 63.86
  • retinal ganglion cell CL0000740
    CSI 14.91
    rCSI 32.93%
    PRS 30.28
  • plasmacytoid dendritic cell CL0000784
    CSI 14.73
    rCSI 14.92%
    PRS 81.22
  • dendritic cell CL0000451
    CSI 14.38
    rCSI 17.72%
    PRS 66.01
  • mesenchymal cell CL0008019
    CSI 14.19
    rCSI 36.04%
    PRS 37.43
  • GABAergic amacrine cell CL4030027
    CSI 13.97
    rCSI 47.86%
    PRS 33.64
  • adipocyte CL0000136
    CSI 13.68
    rCSI 17.57%
    PRS 37.14
  • retinal cone cell CL0000573
    CSI 13.66
    rCSI 21.98%
    PRS 32.37
  • corticothalamic-projecting glutamatergic cortical neuron CL4023013
    CSI 13.55
    rCSI 79.8%
    PRS 27.83
  • ependymal cell CL0000065
    CSI 12.91
    rCSI 26.2%
    PRS 24.89
  • bronchus fibroblast of lung CL2000093
    CSI 12.72
    rCSI 10.34%
    PRS 41.74
  • rod bipolar cell CL0000751
    CSI 12.27
    rCSI 22.06%
    PRS 34.75
  • L2/3 intratelencephalic projecting glutamatergic neuron CL4030059
    CSI 12.15
    rCSI 26.35%
    PRS 31.88
  • vascular leptomeningeal cell CL4023051
    CSI 12.14
    rCSI 21.28%
    PRS 33.82
  • cardiac muscle cell CL0000746
    CSI 12.11
    rCSI 17.38%
    PRS 32.98
  • transit amplifying cell of colon CL0009011
    CSI 11.71
    rCSI 13.75%
    PRS 44.6
  • retinal pigment epithelial cell CL0002586
    CSI 11.58
    rCSI 23%
    PRS 40.51
  • Mueller cell CL0000636
    CSI 11.39
    rCSI 25.99%
    PRS 34.97
  • double negative thymocyte CL0002489
    CSI 11.29
    rCSI 7.85%
    PRS 48.67
  • alveolar type 1 fibroblast cell CL4028004
    CSI 11.28
    rCSI 12.35%
    PRS 44.54
  • common lymphoid progenitor CL0000051
    CSI 11.13
    rCSI 14.87%
    PRS 63.03
  • multi-ciliated epithelial cell CL0005012
    CSI 11.07
    rCSI 11.05%
    PRS 35.43
  • S cone cell CL0003050
    CSI 10.98
    rCSI 48.25%
    PRS 38.42
  • lung ciliated cell CL1000271
    CSI 10.9
    rCSI 12.6%
    PRS 31.69
  • alternatively activated macrophage CL0000890
    CSI 10.82
    rCSI 13.6%
    PRS 53.9
  • fibroblast of lung CL0002553
    CSI 10.82
    rCSI 10.07%
    PRS 40.66
  • fallopian tube secretory epithelial cell CL4030006
    CSI 10.73
    rCSI 10.33%
    PRS 41.32
  • CD14-positive, CD16-negative classical monocyte CL0002057
    CSI 10.59
    rCSI 64.09%
    PRS 65.85
  • interneuron CL0000099
    CSI 10.57
    rCSI 21.22%
    PRS 31.51
  • granulocyte monocyte progenitor cell CL0000557
    CSI 10.57
    rCSI 9.15%
    PRS 44.37
  • tissue-resident macrophage CL0000864
    CSI 10.54
    rCSI 49.34%
    PRS 60.71
  • melanocyte CL0000148
    CSI 10.51
    rCSI 7.78%
    PRS 35.12
  • epithelial cell of proximal tubule CL0002306
    CSI 10.46
    rCSI 25.55%
    PRS 37.39
  • central nervous system neuron CL2000029
    CSI 10.4
    rCSI 76.46%
    PRS 29.82
  • progenitor cell CL0011026
    CSI 10.37
    rCSI 22.04%
    PRS 45.86
  • interstitial cell of Cajal CL0002088
    CSI 10.34
    rCSI 13.16%
    PRS 45.71
  • renal alpha-intercalated cell CL0005011
    CSI 10.31
    rCSI 13.78%
    PRS 48.83
  • microglial cell CL0000129
    CSI 10.22
    rCSI 41.12%
    PRS 52.38
  • neural cell CL0002319
    CSI 10.16
    rCSI 38.33%
    PRS 35.69
  • lung pericyte CL0009089
    CSI 10.12
    rCSI 26.72%
    PRS 47.86
  • pro-B cell CL0000826
    CSI 9.96
    rCSI 8.25%
    PRS 41.56
  • epithelial cell of lower respiratory tract CL0002632
    CSI 9.88
    rCSI 7.66%
    PRS 41
  • retinal bipolar neuron CL0000748
    CSI 9.71
    rCSI 18.19%
    PRS 31.51
  • diffuse bipolar 3b cell CL4033030
    CSI 9.59
    rCSI 63.64%
    PRS 39.94
  • enteric neuron CL0007011
    CSI 0.1
    rCSI 1.1%
    PRS 64.1%
  • pluripotent stem cell CL0002248
    CSI 0.2
    rCSI 5.8%
    PRS 65.8%
  • respiratory goblet cell CL0002370
    CSI 0.2
    rCSI 2.3%
    PRS 61.7%
  • vein endothelial cell of respiratory system CL4033008
    CSI 0.4
    rCSI 2.4%
    PRS 59.6%
  • lymphoid lineage restricted progenitor cell CL0000838
    CSI 0.4
    rCSI 1.4%
    PRS 60.6%
  • tracheobronchial serous cell CL0019001
    CSI 0.4
    rCSI 1.6%
    PRS 57.5%
  • helper T cell CL0000912
    CSI 0.4
    rCSI 0.6%
    PRS 49.8%
  • effector memory CD8-positive, alpha-beta T cell, terminally differentiated CL0001062
    CSI 0.6
    rCSI 3.1%
    PRS 51.1%
  • group 2 innate lymphoid cell CL0001069
    CSI 0.7
    rCSI 3.8%
    PRS 76.6%
  • myelocyte CL0002193
    CSI 0.7
    rCSI 4.7%
    PRS 74.4%
  • paneth cell of epithelium of small intestine CL1000343
    CSI 0.7
    rCSI 2.1%
    PRS 55.5%
  • luminal cell of prostate epithelium CL0002340
    CSI 0.7
    rCSI 4.0%
    PRS 56.6%
  • stromal cell of ovary CL0002132
    CSI 0.8
    rCSI 2.2%
    PRS 56.2%
  • bronchial goblet cell CL1000312
    CSI 0.8
    rCSI 3.2%
    PRS 62.5%
  • mesenchymal stem cell CL0000134
    CSI 1.0
    rCSI 10.6%
    PRS 57.7%
  • tracheal goblet cell CL1000329
    CSI 1.0
    rCSI 2.2%
    PRS 60.7%
  • luminal epithelial cell of mammary gland CL0002326
    CSI 1.1
    rCSI 2.0%
    PRS 56.6%
  • H1 horizontal cell CL0004217
    CSI 1.1
    rCSI 4.4%
    PRS 43.9%
  • regular atrial cardiac myocyte CL0002129
    CSI 1.2
    rCSI 3.9%
    PRS 40.3%
  • placental villous trophoblast CL2000060
    CSI 1.2
    rCSI 1.9%
    PRS 38.8%
  • podocyte CL0000653
    CSI 1.2
    rCSI 5.4%
    PRS 39.4%
  • intestinal crypt stem cell of colon CL0009043
    CSI 1.2
    rCSI 9.3%
    PRS 61.0%
  • pancreatic stellate cell CL0002410
    CSI 1.3
    rCSI 7.4%
    PRS 51.8%
  • respiratory suprabasal cell CL4033048
    CSI 1.3
    rCSI 1.7%
    PRS 45.4%
  • forebrain radial glial cell CL0013000
    CSI 1.3
    rCSI 4.2%
    PRS 48.8%
  • kidney distal convoluted tubule epithelial cell CL1000849
    CSI 1.3
    rCSI 14.2%
    PRS 42.8%
  • pre-conventional dendritic cell CL0002010
    CSI 1.4
    rCSI 17.9%
    PRS 74.5%
  • metallothionein-positive alveolar macrophage CL4033042
    CSI 1.4
    rCSI 15.0%
    PRS 73.5%
  • stromal cell CL0000499
    CSI 1.4
    rCSI 3.9%
    PRS 41.9%
  • endothelial cell of placenta CL0009092
    CSI 1.4
    rCSI 7.1%
    PRS 52.0%
  • starburst amacrine cell CL0004232
    CSI 1.5
    rCSI 12.2%
    PRS 37.5%
  • regular ventricular cardiac myocyte CL0002131
    CSI 1.5
    rCSI 9.2%
    PRS 34.0%
  • CD4-positive helper T cell CL0000492
    CSI 1.5
    rCSI 1.1%
    PRS 52.4%
  • neuroendocrine cell CL0000165
    CSI 1.5
    rCSI 5.9%
    PRS 59.7%
  • cerebellar neuron CL1001611
    CSI 1.6
    rCSI 14.5%
    PRS 30.2%
  • skeletal muscle satellite cell CL0000594
    CSI 1.7
    rCSI 4.9%
    PRS 72.4%
  • transit amplifying cell of small intestine CL0009012
    CSI 1.7
    rCSI 7.4%
    PRS 60.2%
  • mesangial cell CL0000650
    CSI 1.7
    rCSI 6.9%
    PRS 52.9%
  • alveolar adventitial fibroblast CL4028006
    CSI 1.8
    rCSI 2.8%
    PRS 41.8%
  • pancreatic A cell CL0000171
    CSI 1.8
    rCSI 1.9%
    PRS 43.2%
  • neuroplacodal cell CL0000032
    CSI 1.9
    rCSI 18.0%
    PRS 60.4%
  • eye photoreceptor cell CL0000287
    CSI 2.0
    rCSI 21.9%
    PRS 67.7%
  • diffuse bipolar 6 cell CL4033032
    CSI 2.0
    rCSI 10.5%
    PRS 39.2%
  • diffuse bipolar 4 cell CL4033031
    CSI 2.0
    rCSI 23.2%
    PRS 36.2%
  • glandular epithelial cell CL0000150
    CSI 2.0
    rCSI 5.4%
    PRS 63.7%
  • muscle cell CL0000187
    CSI 2.1
    rCSI 4.3%
    PRS 63.1%
  • basket cell CL0000118
    CSI 2.1
    rCSI 13.2%
    PRS 27.4%
  • primitive red blood cell CL0002355
    CSI 2.1
    rCSI 11.5%
    PRS 55.9%
  • cerebral cortex pyramidal neuron CL4023111
    CSI 2.1
    rCSI 13.2%
    PRS 63.6%
  • OFF-bipolar cell CL0000750
    CSI 2.2
    rCSI 3.0%
    PRS 50.8%
  • promyelocyte CL0000836
    CSI 2.2
    rCSI 3.2%
    PRS 50.7%
  • mucous neck cell CL0000651
    CSI 2.3
    rCSI 3.3%
    PRS 54.4%
  • intestinal crypt stem cell of small intestine CL0009017
    CSI 2.3
    rCSI 6.1%
    PRS 49.6%
  • enterocyte of epithelium of large intestine CL0002071
    CSI 2.3
    rCSI 12.0%
    PRS 55.9%
  • extravillous trophoblast CL0008036
    CSI 2.3
    rCSI 2.9%
    PRS 36.9%
  • myeloid dendritic cell, human CL0001057
    CSI 2.3
    rCSI 13.1%
    PRS 73.5%
  • respiratory basal cell CL0002633
    CSI 2.4
    rCSI 2.4%
    PRS 46.4%
  • enteroglial cell CL4040002
    CSI 2.4
    rCSI 12.8%
    PRS 50.5%
  • serous secreting cell of bronchus submucosal gland CL4033005
    CSI 2.4
    rCSI 13.9%
    PRS 73.0%
  • acinar cell of salivary gland CL0002623
    CSI 2.5
    rCSI 58.2%
    PRS 63.6%
  • erythroid progenitor cell CL0000038
    CSI 2.7
    rCSI 15.3%
    PRS 51.6%
  • retinal blood vessel endothelial cell CL0002585
    CSI 2.7
    rCSI 4.3%
    PRS 44.1%
  • keratocyte CL0002363
    CSI 2.8
    rCSI 6.7%
    PRS 51.2%
  • type B pancreatic cell CL0000169
    CSI 2.8
    rCSI 6.3%
    PRS 38.1%
  • diffuse bipolar 1 cell CL4033027
    CSI 2.8
    rCSI 21.4%
    PRS 37.4%
  • macroglial cell CL0000126
    CSI 2.9
    rCSI 7.4%
    PRS 44.1%
  • serotonergic neuron CL0000850
    CSI 2.9
    rCSI 13.0%
    PRS 28.3%
  • intrahepatic cholangiocyte CL0002538
    CSI 2.9
    rCSI 7.0%
    PRS 57.3%
  • adventitial cell CL0002503
    CSI 2.9
    rCSI 7.0%
    PRS 51.7%
  • fraction A pre-pro B cell CL0002045
    CSI 3.1
    rCSI 3.5%
    PRS 63.4%
  • indirect pathway medium spiny neuron CL4023029
    CSI 3.1
    rCSI 74.6%
    PRS 26.9%
  • direct pathway medium spiny neuron CL4023026
    CSI 3.1
    rCSI 74.7%
    PRS 26.0%
  • mature astrocyte CL0002627
    CSI 3.2
    rCSI 13.5%
    PRS 39.0%
  • mature microglial cell CL0002629
    CSI 3.2
    rCSI 13.2%
    PRS 42.5%
  • OFF midget ganglion cell CL4033047
    CSI 3.2
    rCSI 65.0%
    PRS 35.4%
  • OFFx cell CL4033036
    CSI 3.3
    rCSI 15.4%
    PRS 39.3%
  • ON midget ganglion cell CL4033046
    CSI 3.3
    rCSI 66.5%
    PRS 34.2%
  • microcirculation associated smooth muscle cell CL0008035
    CSI 3.3
    rCSI 9.5%
    PRS 43.3%
  • BEST4+ enteroycte CL4030026
    CSI 3.3
    rCSI 4.1%
    PRS 43.4%
  • activated CD4-positive, alpha-beta T cell CL0000896
    CSI 3.3
    rCSI 3.0%
    PRS 61.0%
  • central memory CD8-positive, alpha-beta T cell CL0000907
    CSI 3.3
    rCSI 2.2%
    PRS 50.2%
  • fibroblast of breast CL4006000
    CSI 3.4
    rCSI 14.4%
    PRS 64.3%
  • serous secreting cell CL0000313
    CSI 3.5
    rCSI 17.5%
    PRS 78.0%
  • megakaryocyte CL0000556
    CSI 3.5
    rCSI 15.1%
    PRS 56.6%
  • basophil mast progenitor cell CL0002028
    CSI 3.5
    rCSI 18.6%
    PRS 79.5%
  • kidney loop of Henle thin descending limb epithelial cell CL1001111
    CSI 3.5
    rCSI 5.0%
    PRS 38.1%
  • invaginating midget bipolar cell CL4033034
    CSI 3.5
    rCSI 20.9%
    PRS 39.4%
  • L4 intratelencephalic projecting glutamatergic neuron CL4030063
    CSI 3.6
    rCSI 8.5%
    PRS 31.1%
  • acinar cell CL0000622
    CSI 3.6
    rCSI 5.3%
    PRS 51.4%
  • ON parasol ganglion cell CL4033052
    CSI 3.6
    rCSI 51.0%
    PRS 34.0%
  • Langerhans cell CL0000453
    CSI 3.6
    rCSI 5.5%
    PRS 58.0%
  • flat midget bipolar cell CL4033033
    CSI 3.7
    rCSI 26.3%
    PRS 37.3%
  • transit amplifying cell CL0009010
    CSI 3.7
    rCSI 5.7%
    PRS 56.9%
  • L5/6 near-projecting glutamatergic neuron CL4030067
    CSI 3.7
    rCSI 12.1%
    PRS 30.6%
  • myoepithelial cell CL0000185
    CSI 3.8
    rCSI 9.7%
    PRS 48.7%
  • conjunctival epithelial cell CL1000432
    CSI 3.8
    rCSI 5.8%
    PRS 41.3%
  • centrilobular region hepatocyte CL0019029
    CSI 3.8
    rCSI 10.0%
    PRS 49.7%
  • kidney loop of Henle thick ascending limb epithelial cell CL1001106
    CSI 3.8
    rCSI 33.1%
    PRS 43.4%
  • GABAergic interneuron CL0011005
    CSI 3.9
    rCSI 61.4%
    PRS 44.0%
  • hematopoietic multipotent progenitor cell CL0000837
    CSI 3.9
    rCSI 9.4%
    PRS 58.0%

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Network Configuration

Explore relationships of the current gene. Select an Interaction Source: 'ONTOLOGY' for shared pathways (GO/Reactome) or 'STRING' for protein-protein interactions. Further refine by selecting context genes and comparing Cell Significance Index (CSI) scores between baseline and target cell types and their specific contexts.

Comma-separated if multiple.
Comma-separated if multiple.

Legend:
  • Query Gene
  • Node Color (Target Cell CSI, relative to current network):
    • Very High
    • High
    • Medium
    • Low
    • Very Low
    • CSI N/A
  • Node Size: Proportional to Target Cell CSI magnitude
  • STRING PPI Edge
  • Shared Pathway Edge (ONTOLOGY)

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Other Information

This section provides additional information about the gene, including a description generated by an AI language model and details about associated proteins.

## Summary [RNF130](/details-gene/55819) is a protein-coding gene located on chromosome 5q35.3 that encodes Ring Finger Protein 130, an E3 ubiquitin-protein ligase. Functional annotations strongly implicate [RNF130](/details-gene/55819) in the process of protein ubiquitination, particularly in the context of antigen processing and presentation for the adaptive immune system. Expression data reveals its high significance in myeloid lineage cells, including various monocyte and macrophage subsets. Notably, the gene also shows a prominent expression signature in specific subtypes of GABAergic cortical interneurons, suggesting a potential dual role in both immunity and neural function. ## Cellular Roles and Expression Landscape **Overall**, the expression profile of [RNF130](/details-gene/55819) highlights its prominent role within the myeloid compartment of the immune system. It is most significant in [CD14-low, CD16-positive monocyte](/details-cell/CL0002396) (CSI: 74.15), [elicited macrophage](/details-cell/CL0000861) (CSI: 64.67), and the broader [myeloid leukocyte](/details-cell/CL0000766) population (CSI: 57.86). This pattern is consistent with early research identifying it as an E3 ligase expressed in human leukocytes ([Link](https://doi.org/10.1016/j.gene.2006.01.028)). Its significance in other related cell types, such as [plasmacytoid dendritic cell, human](/details-cell/CL0001058), [Hofbauer cell](/details-cell/CL3000001), and [hematopoietic stem cell](/details-cell/CL0000037), further underscores its deep involvement in the development and function of innate immune cells. Intriguingly, [RNF130](/details-gene/55819) also demonstrates a distinct and high level of significance in several types of inhibitory neurons, including [lamp5 GABAergic cortical interneuron](/details-cell/CL4023011), [pvalb GABAergic cortical interneuron](/details-cell/CL4023018), and [VIP GABAergic cortical interneuron](/details-cell/CL4023016). This suggests a specialized, non-immune function within the central nervous system, possibly related to protein turnover at inhibitory synapses or the regulation of neuronal survival. ## Pathways and Molecular Function The molecular function of [RNF130](/details-gene/55819) is centered on its E3 ubiquitin ligase activity. Gene Ontology annotations confirm its role in [ubiquitin protein ligase activity](/details-go/GO:0061630) and [protein ubiquitination](/details-go/GO:0016567), leading to processes such as [ubiquitin-dependent protein catabolic process](/details-go/GO:0006511) and the regulation of the [apoptotic process](/details-go/GO:0006915). This enzymatic function directly connects to its role in the immune system. Reactome pathway analysis places [RNF130](/details-gene/55819) within the [adaptive immune system](/details-reactome/R-HSA-1280218) and, more specifically, in the pathway for [antigen processing: ubiquitination & proteasome degradation](/details-reactome/R-HSA-983168). This involvement is crucial for [class I MHC mediated antigen processing & presentation](/details-reactome/R-HSA-983169), a process fundamental for the function of antigen-presenting cells like macrophages and dendritic cells, where the gene is highly expressed. By tagging intracellular proteins for degradation, [RNF130](/details-gene/55819) likely plays a key role in generating the peptide antigens that are subsequently presented to T cells. ## Research Directions The dual-expression profile of [RNF130](/details-gene/55819) in both immune and neuronal cells opens up several avenues for future investigation. Its core function as an E3 ligase makes it a critical regulatory node in multiple cellular contexts. **Proposed Hypotheses:** 1. Given its high expression in macrophages and its documented role in antigen processing pathways, [RNF130](/details-gene/55819) may function as a specific regulator of the immunopeptidome by selectively targeting certain classes of proteins for degradation and subsequent presentation on MHC class I molecules. 2. The high significance of [RNF130](/details-gene/55819) in distinct GABAergic interneuron subtypes suggests it regulates the turnover of key synaptic proteins (e.g., receptors, scaffolding proteins, or ion channels), thereby modulating the strength and plasticity of inhibitory circuits in the cortex. **Experimental Approach:** To test the first hypothesis regarding its role in antigen presentation, a compelling experiment would be to use CRISPR-Cas9 to knock out [RNF130](/details-gene/55819) in a human myeloid cell line such as THP-1. These knockout cells, alongside wild-type controls, could be stimulated with interferon-gamma to upregulate the antigen presentation machinery. Subsequently, mass spectrometry-based immunopeptidomics could be employed to directly compare the repertoire of peptides presented by MHC class I molecules. A significant shift in the presented peptide landscape in the knockout cells would provide direct evidence for the role of [RNF130](/details-gene/55819) in shaping the pool of antigens available for T-cell surveillance. **Therapeutic Potential:** As an E3 ubiquitin ligase, [RNF130](/details-gene/55819) is a potentially druggable enzyme. Its role in modulating antigen presentation makes it an attractive target for immunotherapy. Inhibition of [RNF130](/details-gene/55819) could potentially enhance the presentation of tumor-associated antigens in cancer, thereby boosting anti-tumor T-cell responses. Conversely, strategies to enhance its activity might be explored in the context of autoimmune diseases to promote the clearance of key autoantigen-processing components. However, its significant expression in cortical interneurons raises a critical concern for potential neurological off-target effects, which would require careful consideration in any therapeutic development program.

Genular Protein ID: 2616940261

Symbol: GOLI_HUMAN

Name: E3 ubiquitin-protein ligase RNF130

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 13679316

Title: Goliath, a ring-H2 mitochondrial protein, regulated by luteinizing hormone/human chorionic gonadotropin in rat Leydig cells.

PubMed ID: 13679316

DOI: 10.1095/biolreprod.103.018820

PubMed ID: 15372022

Title: The DNA sequence and comparative analysis of human chromosome 5.

PubMed ID: 15372022

DOI: 10.1038/nature02919

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 16549277

Title: h-Goliath, paralog of GRAIL, is a new E3 ligase protein, expressed in human leukocytes.

PubMed ID: 16549277

DOI: 10.1016/j.gene.2006.01.028

PubMed ID: 19159218

Title: Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry.

PubMed ID: 19159218

DOI: 10.1021/pr8008012

PubMed ID: 19690332

Title: Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions.

PubMed ID: 19690332

DOI: 10.1126/scisignal.2000007

Sequence Information:

  • Length: 419
  • Mass: 46405
  • Checksum: 74E8D987334F3B8E
  • Sequence:
  • MSCAGRAGPA RLAALALLTC SLWPARADNA SQEYYTALIN VTVQEPGRGA PLTFRIDRGR 
    YGLDSPKAEV RGQVLAPLPL HGVADHLGCD PQTRFFVPPN IKQWIALLQR GNCTFKEKIS 
    RAAFHNAVAV VIYNNKSKEE PVTMTHPGTG DIIAVMITEL RGKDILSYLE KNISVQMTIA 
    VGTRMPPKNF SRGSLVFVSI SFIVLMIISS AWLIFYFIQK IRYTNARDRN QRRLGDAAKK 
    AISKLTTRTV KKGDKETDPD FDHCAVCIES YKQNDVVRIL PCKHVFHKSC VDPWLSEHCT 
    CPMCKLNILK ALGIVPNLPC TDNVAFDMER LTRTQAVNRR SALGDLAGDN SLGLEPLRTS 
    GISPLPQDGE LTPRTGEINI AVTKEWFIIA SFGLLSALTL CYMIIRATAS LNANEVEWF

Genular Protein ID: 724104412

Symbol: Q2HIY3_HUMAN

Name: N/A

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

Sequence Information:

  • Length: 276
  • Mass: 30810
  • Checksum: 6E9F599E2315EC90
  • Sequence:
  • MTHPGTGDII AVMITELRGK DILSYLEKNI SVQMTIAVGT RMPPKNFSRG SLVFVSISFI 
    VLMIISSAWL IFYFIQKIRY TNARDRNQRR LGDAAKKAIS KLTTRTVKKG DKETDPDFDH 
    CAVCIESYKQ NDVVRILPCK HVFHKSCVDP WLSEHCTCPM CKLNILKALG IVPNLPCTDN 
    VAFDMERLTR TQAVNRRSAL GDLAGDNSLG LEPLRTSGIS PLPQDGELTP RTGEINIAVT 
    KEWFIIASFG LLSALTLCYM IIRATASLNA NEVEWF