Details for: BRWD1

Gene ID: 54014

Gene Type:  Protein-coding  - A gene that serves as a template for producing a messenger RNA (mRNA) molecule, which is then translated into a functional protein.

Symbol: BRWD1

Ensembl ID: ENSG00000185658

Description: bromodomain and WD repeat domain containing 1

Selected Context(s):  Overall

Cell Significance Landscape

Contexts:

Associated with

Significant Cells

Cell Significance Index (CSI) scores for the chosen context(s)

  • pvalb GABAergic cortical interneuron CL4023018
    CSI 56.89
    rCSI 70.77%
    PRS 9.32
  • sst GABAergic cortical interneuron CL4023017
    CSI 53.78
    rCSI 69.34%
    PRS 10.53
  • lamp5 GABAergic cortical interneuron CL4023011
    CSI 50.86
    rCSI 85.38%
    PRS 10.02
  • sncg GABAergic cortical interneuron CL4023015
    CSI 48.17
    rCSI 77.46%
    PRS 10.89
  • VIP GABAergic cortical interneuron CL4023016
    CSI 45.64
    rCSI 54.51%
    PRS 9.82
  • caudal ganglionic eminence derived cortical interneuron CL4023064
    CSI 43.19
    rCSI 76.27%
    PRS 10
  • L2/3-6 intratelencephalic projecting glutamatergic neuron CL4023040
    CSI 35.12
    rCSI 85.35%
    PRS 9.84
  • L2/3 intratelencephalic projecting glutamatergic neuron CL4030059
    CSI 30.99
    rCSI 67.22%
    PRS 10.8
  • neuron CL0000540
    CSI 27.89
    rCSI 74.27%
    PRS 13.89
  • L6b glutamatergic cortical neuron CL4023038
    CSI 27.49
    rCSI 85.91%
    PRS 10.72
  • chandelier pvalb GABAergic cortical interneuron CL4023036
    CSI 27.3
    rCSI 85.37%
    PRS 11.49
  • L5 extratelencephalic projecting glutamatergic cortical neuron CL4023041
    CSI 24.22
    rCSI 87.17%
    PRS 9.39
  • near-projecting glutamatergic cortical neuron CL4023012
    CSI 22.97
    rCSI 86.82%
    PRS 10.29
  • GABAergic amacrine cell CL4030027
    CSI 22.27
    rCSI 76.29%
    PRS 14.67
  • L4 intratelencephalic projecting glutamatergic neuron CL4030063
    CSI 21.9
    rCSI 52.39%
    PRS 10.2
  • kidney loop of Henle thin ascending limb epithelial cell CL1001107
    CSI 21.85
    rCSI 56.48%
    PRS 15.88
  • cardiac muscle cell CL0000746
    CSI 19.47
    rCSI 27.94%
    PRS 13.21
  • L5/6 near-projecting glutamatergic neuron CL4030067
    CSI 15.83
    rCSI 52.02%
    PRS 9.76
  • S cone cell CL0003050
    CSI 15.25
    rCSI 67.03%
    PRS 14.09
  • Kupffer cell CL0000091
    CSI 14.56
    rCSI 33.29%
    PRS 16.53
  • corticothalamic-projecting glutamatergic cortical neuron CL4023013
    CSI 14.28
    rCSI 84.07%
    PRS 10.49
  • small intestine goblet cell CL1000495
    CSI 13.88
    rCSI 30.4%
    PRS 22.8
  • renal principal cell CL0005009
    CSI 13.45
    rCSI 34.95%
    PRS 22.16
  • chondrocyte CL0000138
    CSI 13.11
    rCSI 20.84%
    PRS 14.45
  • cardiac endothelial cell CL0010008
    CSI 12.41
    rCSI 50.07%
    PRS 15.26
  • differentiation-committed oligodendrocyte precursor CL4023059
    CSI 12.08
    rCSI 21.95%
    PRS 14.05
  • central nervous system neuron CL2000029
    CSI 11.62
    rCSI 85.38%
    PRS 9.48
  • retinal ganglion cell CL0000740
    CSI 11.52
    rCSI 25.45%
    PRS 12.19
  • retinal cone cell CL0000573
    CSI 10.38
    rCSI 16.71%
    PRS 13.07
  • renal beta-intercalated cell CL0002201
    CSI 10.16
    rCSI 24.23%
    PRS 19.85
  • H2 horizontal cell CL0004218
    CSI 10.12
    rCSI 50.32%
    PRS 18.14
  • pro-B cell CL0000826
    CSI 10.02
    rCSI 8.3%
    PRS 17.22
  • intestinal crypt stem cell of small intestine CL0009017
    CSI 9.57
    rCSI 25.8%
    PRS 22.02
  • kidney connecting tubule epithelial cell CL1000768
    CSI 9.5
    rCSI 24.1%
    PRS 12.9
  • endothelial cell of pericentral hepatic sinusoid CL0019022
    CSI 9.25
    rCSI 28.49%
    PRS 25.49
  • hepatic stellate cell CL0000632
    CSI 8.85
    rCSI 33.15%
    PRS 14.43
  • blood vessel smooth muscle cell CL0019018
    CSI 8.54
    rCSI 69.44%
    PRS 17.34
  • retinal pigment epithelial cell CL0002586
    CSI 8.11
    rCSI 16.1%
    PRS 18.1
  • extravillous trophoblast CL0008036
    CSI 7.86
    rCSI 9.72%
    PRS 14.92
  • parietal epithelial cell CL1000452
    CSI 7.67
    rCSI 20.5%
    PRS 14.11
  • kidney loop of Henle thin descending limb epithelial cell CL1001111
    CSI 7.37
    rCSI 10.45%
    PRS 15.85
  • placental villous trophoblast CL2000060
    CSI 6.99
    rCSI 10.8%
    PRS 15.92
  • glycinergic amacrine cell CL4030028
    CSI 6.57
    rCSI 17.12%
    PRS 16.74
  • unswitched memory B cell CL0000970
    CSI 6.53
    rCSI 5.49%
    PRS 27.27
  • CD4-positive, alpha-beta thymocyte CL0000810
    CSI 6.41
    rCSI 5.13%
    PRS 30.57
  • plasmacytoid dendritic cell, human CL0001058
    CSI 6.28
    rCSI 4.39%
    PRS 18.06
  • diffuse bipolar 3b cell CL4033030
    CSI 6.24
    rCSI 41.4%
    PRS 17.42
  • diffuse bipolar 3a cell CL4033029
    CSI 6.04
    rCSI 41.12%
    PRS 17.15
  • medium spiny neuron CL1001474
    CSI 5.91
    rCSI 50.9%
    PRS 7.3
  • alveolar macrophage CL0000583
    CSI 5.64
    rCSI 9.29%
    PRS 20.07
  • renal alpha-intercalated cell CL0005011
    CSI 5.56
    rCSI 7.44%
    PRS 22.45
  • retinal rod cell CL0000604
    CSI 5.53
    rCSI 9.74%
    PRS 16.69
  • enterocyte of epithelium of large intestine CL0002071
    CSI 5.18
    rCSI 27.22%
    PRS 29.5
  • H1 horizontal cell CL0004217
    CSI 5.15
    rCSI 20.41%
    PRS 23.03
  • type B pancreatic cell CL0000169
    CSI 4.87
    rCSI 10.77%
    PRS 15.8
  • neural progenitor cell CL0011020
    CSI 4.87
    rCSI 21.41%
    PRS 16.23
  • epithelial cell of proximal tubule CL0002306
    CSI 4.84
    rCSI 11.83%
    PRS 16.82
  • OFF-bipolar cell CL0000750
    CSI 4.8
    rCSI 6.56%
    PRS 27.03
  • eye photoreceptor cell CL0000287
    CSI 4.79
    rCSI 53.86%
    PRS 41
  • invaginating midget bipolar cell CL4033034
    CSI 4.74
    rCSI 27.98%
    PRS 17.63
  • endothelial cell of vascular tree CL0002139
    CSI 4.7
    rCSI 25.68%
    PRS 27.48
  • airway submucosal gland duct basal cell CL4033024
    CSI 4.54
    rCSI 29.04%
    PRS 43.8
  • effector CD8-positive, alpha-beta T cell CL0001050
    CSI 4.52
    rCSI 3.43%
    PRS 22.47
  • retinal bipolar neuron CL0000748
    CSI 4.5
    rCSI 8.43%
    PRS 12.2
  • regular atrial cardiac myocyte CL0002129
    CSI 4.45
    rCSI 14.34%
    PRS 17.9
  • oligodendrocyte precursor cell CL0002453
    CSI 4.43
    rCSI 9.75%
    PRS 12.2
  • choroid plexus epithelial cell CL0000706
    CSI 4.3
    rCSI 7.04%
    PRS 13.1
  • BEST4+ enteroycte CL4030026
    CSI 4.29
    rCSI 5.34%
    PRS 18.02
  • melanocyte CL0000148
    CSI 4.26
    rCSI 3.16%
    PRS 14.95
  • glutamatergic neuron CL0000679
    CSI 4.13
    rCSI 8.48%
    PRS 16.96
  • periportal region hepatocyte CL0019026
    CSI 4.12
    rCSI 16.01%
    PRS 23.29
  • ON midget ganglion cell CL4033046
    CSI 4.09
    rCSI 83.29%
    PRS 13.21
  • OFF midget ganglion cell CL4033047
    CSI 4.05
    rCSI 82.5%
    PRS 14.22
  • helper T cell CL0000912
    CSI 3.87
    rCSI 5.48%
    PRS 23.49
  • corneal epithelial cell CL0000575
    CSI 3.75
    rCSI 10.72%
    PRS 29.88
  • starburst amacrine cell CL0004232
    CSI 3.75
    rCSI 31.52%
    PRS 17.37
  • GABAergic interneuron CL0011005
    CSI 3.72
    rCSI 58.69%
    PRS 12.27
  • ON parasol ganglion cell CL4033052
    CSI 3.72
    rCSI 52.77%
    PRS 12.4
  • diffuse bipolar 2 cell CL4033028
    CSI 3.7
    rCSI 28.63%
    PRS 17.69
  • direct pathway medium spiny neuron CL4023026
    CSI 3.68
    rCSI 88.01%
    PRS 8.28
  • indirect pathway medium spiny neuron CL4023029
    CSI 3.64
    rCSI 87.72%
    PRS 9.23
  • neuroblast (sensu Nematoda and Protostomia) CL0000338
    CSI 3.51
    rCSI 4.06%
    PRS 14.93
  • centrilobular region hepatocyte CL0019029
    CSI 3.5
    rCSI 9.13%
    PRS 26.37
  • cerebral cortex endothelial cell CL1001602
    CSI 3.5
    rCSI 6.05%
    PRS 12.98
  • Mueller cell CL0000636
    CSI 3.47
    rCSI 7.91%
    PRS 14.64
  • glioblast CL0000030
    CSI 3.46
    rCSI 5.52%
    PRS 14.63
  • myeloid leukocyte CL0000766
    CSI 3.43
    rCSI 3.17%
    PRS 17.55
  • vascular associated smooth muscle cell CL0000359
    CSI 3.3
    rCSI 10.7%
    PRS 20.69
  • radial glial cell CL0000681
    CSI 3.19
    rCSI 4.43%
    PRS 17.49
  • enteric smooth muscle cell CL0002504
    CSI 3.18
    rCSI 4.53%
    PRS 19.21
  • inhibitory interneuron CL0000498
    CSI 3.08
    rCSI 7.11%
    PRS 13.7
  • blood vessel endothelial cell CL0000071
    CSI 3.08
    rCSI 6.39%
    PRS 16.99
  • CD16-negative, CD56-bright natural killer cell, human CL0000938
    CSI 2.93
    rCSI 2.2%
    PRS 46.8
  • adipocyte CL0000136
    CSI 2.91
    rCSI 3.74%
    PRS 16.62
  • naive B cell CL0000788
    CSI 2.91
    rCSI 2.5%
    PRS 28.39
  • endothelial cell of placenta CL0009092
    CSI 2.91
    rCSI 14.35%
    PRS 23.09
  • mononuclear phagocyte CL0000113
    CSI 2.84
    rCSI 6.24%
    PRS 19.12
  • transit amplifying cell of colon CL0009011
    CSI 2.81
    rCSI 3.3%
    PRS 19.92
  • amacrine cell CL0000561
    CSI 2.68
    rCSI 7.77%
    PRS 13.01
  • naive thymus-derived CD8-positive, alpha-beta T cell CL0000900
    CSI 2.68
    rCSI 1.88%
    PRS 40.99
  • CD4-positive, CD25-positive, alpha-beta regulatory T cell CL0000792
    CSI -8.3
    rCSI -8.2%
    PRS 26.7%
  • naive T cell CL0000898
    CSI -6.9
    rCSI -4.8%
    PRS 24.1%
  • CD14-low, CD16-positive monocyte CL0002396
    CSI -2.1
    rCSI -1.6%
    PRS 15.7%
  • mesenchymal cell CL0008019
    CSI -1.9
    rCSI -4.7%
    PRS 17.2%
  • luminal cell of prostate epithelium CL0002340
    CSI -1.2
    rCSI -6.7%
    PRS 30.3%
  • CD8-positive, alpha-beta memory T cell, CD45RO-positive CL0001203
    CSI -0.8
    rCSI -0.9%
    PRS 21.6%
  • colonocyte CL1000347
    CSI -0.6
    rCSI -0.8%
    PRS 23.3%
  • promonocyte CL0000559
    CSI -0.2
    rCSI -0.4%
    PRS 23.1%
  • mesenchymal stem cell CL0000134
    CSI 0.0
    rCSI 0.1%
    PRS 30.5%
  • Cajal-Retzius cell CL0000695
    CSI 0.0
    rCSI 0.3%
    PRS 35.3%
  • enteric neuron CL0007011
    CSI 0.1
    rCSI 1.0%
    PRS 41.0%
  • cytotoxic T cell CL0000910
    CSI 0.1
    rCSI 0.4%
    PRS 24.9%
  • CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human CL0001074
    CSI 0.1
    rCSI 1.0%
    PRS 58.9%
  • syncytiotrophoblast cell CL0000525
    CSI 0.1
    rCSI 0.3%
    PRS 32.3%
  • myeloid lineage restricted progenitor cell CL0000839
    CSI 0.1
    rCSI 0.5%
    PRS 33.2%
  • pancreatic PP cell CL0002275
    CSI 0.1
    rCSI 0.4%
    PRS 29.6%
  • mucus secreting cell CL0000319
    CSI 0.1
    rCSI 0.2%
    PRS 22.0%
  • large pre-B-II cell CL0000957
    CSI 0.1
    rCSI 0.3%
    PRS 29.3%
  • luminal epithelial cell of mammary gland CL0002326
    CSI 0.1
    rCSI 0.2%
    PRS 25.9%
  • erythroid progenitor cell CL0000038
    CSI 0.1
    rCSI 0.7%
    PRS 26.0%
  • basal-myoepithelial cell of mammary gland CL0002324
    CSI 0.1
    rCSI 0.3%
    PRS 36.4%
  • respiratory goblet cell CL0002370
    CSI 0.1
    rCSI 1.6%
    PRS 32.4%
  • acinar cell CL0000622
    CSI 0.2
    rCSI 0.3%
    PRS 22.3%
  • colon macrophage CL0009038
    CSI 0.2
    rCSI 0.9%
    PRS 35.3%
  • CD14-positive, CD16-negative classical monocyte CL0002057
    CSI 0.2
    rCSI 1.2%
    PRS 37.7%
  • effector memory CD8-positive, alpha-beta T cell, terminally differentiated CL0001062
    CSI 0.2
    rCSI 1.1%
    PRS 22.5%
  • lung ciliated cell CL1000271
    CSI 0.2
    rCSI 0.3%
    PRS 12.5%
  • vein endothelial cell of respiratory system CL4033008
    CSI 0.2
    rCSI 1.6%
    PRS 32.9%
  • pluripotent stem cell CL0002248
    CSI 0.2
    rCSI 7.2%
    PRS 38.0%
  • alveolar adventitial fibroblast CL4028006
    CSI 0.2
    rCSI 0.4%
    PRS 17.1%
  • pancreatic acinar cell CL0002064
    CSI 0.2
    rCSI 0.3%
    PRS 18.6%
  • enterocyte of epithelium of small intestine CL1000334
    CSI 0.2
    rCSI 3.8%
    PRS 41.2%
  • pancreatic stellate cell CL0002410
    CSI 0.3
    rCSI 1.5%
    PRS 25.5%
  • eosinophil CL0000771
    CSI 0.3
    rCSI 1.7%
    PRS 42.9%
  • endothelial cell of venule CL1000414
    CSI 0.3
    rCSI 2.4%
    PRS 57.8%
  • serotonergic neuron CL0000850
    CSI 0.3
    rCSI 1.2%
    PRS 9.2%
  • CD1c-positive myeloid dendritic cell CL0002399
    CSI 0.3
    rCSI 0.3%
    PRS 20.3%
  • Hofbauer cell CL3000001
    CSI 0.3
    rCSI 0.5%
    PRS 21.4%
  • retinal blood vessel endothelial cell CL0002585
    CSI 0.3
    rCSI 0.5%
    PRS 18.7%
  • elicited macrophage CL0000861
    CSI 0.3
    rCSI 0.3%
    PRS 19.8%
  • erythroid lineage cell CL0000764
    CSI 0.3
    rCSI 2.1%
    PRS 38.2%
  • forebrain radial glial cell CL0013000
    CSI 0.3
    rCSI 1.0%
    PRS 24.7%
  • central memory CD8-positive, alpha-beta T cell CL0000907
    CSI 0.3
    rCSI 0.2%
    PRS 20.7%
  • stromal cell of ovary CL0002132
    CSI 0.4
    rCSI 1.0%
    PRS 28.1%
  • intestinal crypt stem cell of colon CL0009043
    CSI 0.4
    rCSI 2.7%
    PRS 30.9%
  • early lymphoid progenitor CL0000936
    CSI 0.4
    rCSI 0.3%
    PRS 19.5%
  • late pro-B cell CL0002048
    CSI 0.4
    rCSI 0.9%
    PRS 46.9%
  • microcirculation associated smooth muscle cell CL0008035
    CSI 0.4
    rCSI 1.1%
    PRS 19.3%
  • mature B cell CL0000785
    CSI 0.4
    rCSI 0.3%
    PRS 21.3%
  • diffuse bipolar 6 cell CL4033032
    CSI 0.4
    rCSI 2.1%
    PRS 19.5%
  • primitive red blood cell CL0002355
    CSI 0.4
    rCSI 2.2%
    PRS 30.7%
  • pancreatic ductal cell CL0002079
    CSI 0.4
    rCSI 0.8%
    PRS 17.4%
  • P/D1 enteroendocrine cell CL0002268
    CSI 0.5
    rCSI 2.5%
    PRS 40.5%
  • group 3 innate lymphoid cell CL0001071
    CSI 0.5
    rCSI 0.3%
    PRS 17.9%
  • megakaryocyte CL0000556
    CSI 0.5
    rCSI 2.0%
    PRS 30.0%
  • CD8-positive, CD28-negative, alpha-beta regulatory T cell CL0000920
    CSI 0.5
    rCSI 0.9%
    PRS 28.7%
  • intestinal epithelial cell CL0002563
    CSI 0.5
    rCSI 0.5%
    PRS 17.9%
  • tracheobronchial smooth muscle cell CL0019019
    CSI 0.5
    rCSI 0.9%
    PRS 22.5%
  • paneth cell of epithelium of small intestine CL1000343
    CSI 0.5
    rCSI 1.4%
    PRS 26.4%
  • dopaminergic neuron CL0000700
    CSI 0.5
    rCSI 2.8%
    PRS 8.4%
  • mucous neck cell CL0000651
    CSI 0.5
    rCSI 0.7%
    PRS 27.0%
  • pancreatic A cell CL0000171
    CSI 0.5
    rCSI 0.5%
    PRS 18.2%
  • cardiac blood vessel endothelial cell CL0010006
    CSI 0.5
    rCSI 3.6%
    PRS 18.9%
  • intestinal tuft cell CL0019032
    CSI 0.5
    rCSI 0.8%
    PRS 19.5%
  • ciliated columnar cell of tracheobronchial tree CL0002145
    CSI 0.5
    rCSI 1.2%
    PRS 17.6%
  • effector CD4-positive, alpha-beta T cell CL0001044
    CSI 0.5
    rCSI 1.5%
    PRS 25.1%
  • IgA plasma cell CL0000987
    CSI 0.5
    rCSI 0.5%
    PRS 31.6%
  • lung macrophage CL1001603
    CSI 0.5
    rCSI 1.2%
    PRS 19.6%
  • type EC enteroendocrine cell CL0000577
    CSI 0.5
    rCSI 1.9%
    PRS 27.7%
  • vasa recta ascending limb cell CL1001131
    CSI 0.5
    rCSI 2.4%
    PRS 54.0%
  • transit amplifying cell CL0009010
    CSI 0.6
    rCSI 0.8%
    PRS 27.6%
  • mesangial cell CL0000650
    CSI 0.6
    rCSI 2.2%
    PRS 23.0%
  • natural T-regulatory cell CL0000903
    CSI 0.6
    rCSI 1.1%
    PRS 45.4%
  • multi-ciliated epithelial cell CL0005012
    CSI 0.6
    rCSI 0.6%
    PRS 14.5%
  • enteroendocrine cell of colon CL0009042
    CSI 0.6
    rCSI 2.8%
    PRS 43.1%
  • keratocyte CL0002363
    CSI 0.6
    rCSI 1.4%
    PRS 25.3%
  • megakaryocyte-erythroid progenitor cell CL0000050
    CSI 0.6
    rCSI 0.6%
    PRS 15.3%
  • CD8-alpha-alpha-positive, alpha-beta intraepithelial T cell CL0000915
    CSI 0.6
    rCSI 2.8%
    PRS 55.1%
  • lymphoid lineage restricted progenitor cell CL0000838
    CSI 0.6
    rCSI 2.4%
    PRS 28.0%
  • respiratory epithelial cell CL0002368
    CSI 0.6
    rCSI 3.9%
    PRS 51.9%
  • epicardial adipocyte CL1000309
    CSI 0.6
    rCSI 2.1%
    PRS 20.6%
  • granulocyte CL0000094
    CSI 0.6
    rCSI 1.0%
    PRS 21.8%
  • GABAergic neuron CL0000617
    CSI 0.7
    rCSI 2.2%
    PRS 11.8%
  • lung neuroendocrine cell CL1000223
    CSI 0.7
    rCSI 1.0%
    PRS 19.5%
  • OFFx cell CL4033036
    CSI 0.7
    rCSI 3.2%
    PRS 17.6%
  • pulmonary artery endothelial cell CL1001568
    CSI 0.7
    rCSI 1.0%
    PRS 25.7%
  • bronchus fibroblast of lung CL2000093
    CSI 0.7
    rCSI 0.6%
    PRS 18.0%
  • skeletal muscle satellite stem cell CL0008011
    CSI 0.7
    rCSI 3.3%
    PRS 44.8%
  • respiratory basal cell CL0002633
    CSI 0.8
    rCSI 0.8%
    PRS 20.0%
  • common dendritic progenitor CL0001029
    CSI 0.8
    rCSI 1.0%
    PRS 22.0%
  • epithelial cell of nephron CL1000449
    CSI 0.8
    rCSI 7.5%
    PRS 62.2%
  • T-helper 17 cell CL0000899
    CSI 0.8
    rCSI 0.6%
    PRS 30.2%
  • tracheal goblet cell CL1000329
    CSI 0.8
    rCSI 1.7%
    PRS 33.4%
  • cerebellar granule cell CL0001031
    CSI 0.8
    rCSI 1.2%
    PRS 15.6%
  • hematopoietic multipotent progenitor cell CL0000837
    CSI 0.8
    rCSI 1.9%
    PRS 27.1%
  • club cell CL0000158
    CSI 0.8
    rCSI 1.2%
    PRS 19.7%
  • duct epithelial cell CL0000068
    CSI 0.8
    rCSI 1.2%
    PRS 18.0%
  • type L enteroendocrine cell CL0002279
    CSI 0.8
    rCSI 1.5%
    PRS 33.3%
  • mesothelial cell CL0000077
    CSI 0.8
    rCSI 3.2%
    PRS 4.8%
  • granulocyte monocyte progenitor cell CL0000557
    CSI 0.8
    rCSI 0.7%
    PRS 19.1%

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Network Configuration

Explore relationships of the current gene. Select an Interaction Source: 'ONTOLOGY' for shared pathways (GO/Reactome) or 'STRING' for protein-protein interactions. Further refine by selecting context genes and comparing Cell Significance Index (CSI) scores between baseline and target cell types and their specific contexts.

Comma-separated if multiple.
Comma-separated if multiple.

Legend:
  • Query Gene
  • Node Color (Target Cell CSI, relative to current network):
    • Very High
    • High
    • Medium
    • Low
    • Very Low
    • CSI N/A
  • Node Size: Proportional to Target Cell CSI magnitude
  • STRING PPI Edge
  • Shared Pathway Edge (ONTOLOGY)

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Other Information

This section provides additional information about the gene, including a description generated by an AI language model and details about associated proteins.

## Summary [BRWD1](/details-gene/54014) (Bromodomain and WD Repeat Domain Containing 1) is a protein-coding gene located on chromosome 21. It functions as a chromatin-associated protein, implicated in the [regulation of transcription by rna polymerase ii](https://www.ebi.ac.uk/QuickGO/term/GO:0006357) through its bromodomain, which recognizes acetylated histones ([Link](https://doi.org/10.1016/j.cell.2012.02.013)). Functionally, it is also linked to [cytoskeleton organization](https://www.ebi.ac.uk/QuickGO/term/GO:0007010) and the structure of cilia. Expression data indicates that **Overall**, [BRWD1](/details-gene/54014) is a highly significant marker for a wide range of neuronal cell types, particularly diverse subtypes of cortical interneurons, suggesting a crucial role in establishing or maintaining neuronal identity and function within the central nervous system. ## Cellular Roles and Expression Landscape **Overall**, the expression profile of [BRWD1](/details-gene/54014) demonstrates a profound enrichment within the central nervous system. The gene shows its highest significance in various GABAergic inhibitory interneurons, including `[pvalb GABAergic cortical interneuron](/details-cell/CL4023018)` (CSI: 56.89), `[sst GABAergic cortical interneuron](/details-cell/CL4023017)` (CSI: 53.78), and `[lamp5 GABAergic cortical interneuron](/details-cell/CL4023011)` (CSI: 50.86). Its significance extends to glutamatergic excitatory neurons as well, such as `[L2/3-6 intratelencephalic projecting glutamatergic neuron](/details-cell/CL4023040)` (CSI: 35.12), indicating a broad and fundamental role in the cerebral cortex. This strong and specific expression pattern across functionally distinct neuronal populations suggests that [BRWD1](/details-gene/54014) may be involved in core transcriptional programs essential for neuronal cell fate and function. In stark contrast, [BRWD1](/details-gene/54014) shows low to negative significance in hematopoietic and epithelial lineages. It is notably identified as an anti-marker for immune cells like `[CD4-positive, CD25-positive, alpha-beta regulatory T cell](/details-cell/CL0000792)` (CSI: -8.34) and `[naive T cell](/details-cell/CL0000898)` (CSI: -6.87), as well as cells like `[colonocyte](/details-cell/CL1000347)` (CSI: -0.56). This pattern underscores a highly specialized function for [BRWD1](/details-gene/54014), primarily constrained to the nervous system and largely absent from peripheral immune and structural tissues in the contexts measured. ## Pathways and Molecular Function The molecular functions of [BRWD1](/details-gene/54014) are consistent with a dual role in nuclear and cellular organization. As a bromodomain-containing protein, its involvement in Reactome pathways such as [Chromatin modifying enzymes](https://reactome.org/content/detail/R-HSA-3247509) and [Chromatin organization](https://reactome.org/content/detail/R-HSA-4839726) is expected. This function likely underpins its role in regulating the specific gene expression programs that define the various neuronal subtypes in which it is highly expressed. Concurrently, Gene Ontology annotations link [BRWD1](/details-gene/54014) to [Cytoskeleton organization](https://www.ebi.ac.uk/QuickGO/term/GO:0007010) and structural components like the [Axoneme](https://www.ebi.ac.uk/QuickGO/term/GO:0005930) and [Motile cilium](https://www.ebi.ac.uk/QuickGO/term/GO:0031514). This is strongly supported by clinical evidence, where bi-allelic variants in [BRWD1](/details-gene/54014) have been shown to cause male infertility with asthenoteratozoospermia, likely due to primary ciliary dyskinesia ([Link](https://doi.org/10.1007/s00439-020-02241-4)). This suggests [BRWD1](/details-gene/54014) may function as an integrator, linking chromatin state and transcriptional regulation to the physical structure and motility of cilia, a process that may be relevant to neuronal primary cilia. Although annotated in immune pathways like [Signaling by interleukins](https://reactome.org/content/detail/R-HSA-449147), its low expression in peripheral immune cells suggests this role may be context-specific or perhaps relevant to neuro-immune signaling. ## Research Directions The specific enrichment of [BRWD1](/details-gene/54014) in diverse neuronal subtypes, coupled with its dual function in chromatin and ciliary biology, presents several avenues for future investigation. **Testable Hypotheses:** 1. **[BRWD1](/details-gene/54014) is a key epigenetic regulator required for the specification and maintenance of cortical interneuron subtype identity.** Its high significance in PVALB, SST, and VIP interneurons suggests it may bind to specific acetylated histone sites to control the unique transcriptional programs that distinguish these lineages during neurodevelopment. 2. **[BRWD1](/details-gene/54014) coordinates transcriptional programs with the morphogenesis and function of primary cilia in neurons.** This hypothesis posits that the protein acts as a molecular bridge, ensuring that gene expression related to neuronal signaling is coupled with the structural integrity of cilia, which are critical sensory organelles on neurons. **Proposed Experimental Approach:** To test the first hypothesis regarding the role of [BRWD1](/details-gene/54014) in interneuron specification, a loss-of-function study in a developmental model would be informative. Specifically, one could utilize CRISPR-Cas9 to knock out [BRWD1](/details-gene/54014) in human induced pluripotent stem cells (iPSCs) and then direct their differentiation towards cortical interneurons. Single-cell RNA sequencing (scRNA-seq) and ATAC-seq on the resulting neuronal populations at various time points would reveal defects in lineage commitment, subtype diversification, and the underlying changes in chromatin accessibility. This would clarify whether [BRWD1](/details-gene/54014) is essential for the emergence or the maturation of specific interneuron subtypes. **Therapeutic Potential:** As a bromodomain-containing protein, [BRWD1](/details-gene/54014) is a member of a "druggable" protein family. Given its location on chromosome 21, its potential dysregulation in Down syndrome warrants investigation. Its high neuronal specificity suggests that a targeted inhibitor of the [BRWD1](/details-gene/54014) bromodomain could offer a therapeutic strategy for neurological disorders characterized by transcriptional misregulation, with potentially fewer off-target effects than pan-bromodomain inhibitors. Assuming a pathogenic gain-of-function, therapeutic inhibition would be the logical approach to normalize aberrant gene expression in affected neuronal circuits.

Genular Protein ID: 2705549466

Symbol: BRWD1_HUMAN

Name: Bromodomain and WD repeat-containing protein 1

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 12359327

Title: Characterisation and expression analysis of the WDR9 gene, located in the Down critical region-2 of the human chromosome 21.

PubMed ID: 12359327

DOI: 10.1016/s0167-4781(02)00421-9

PubMed ID: 10830953

Title: The DNA sequence of human chromosome 21.

PubMed ID: 10830953

DOI: 10.1038/35012518

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 9480850

Title: High resolution physical mapping and identification of transcribed sequences in the Down syndrome region-2.

PubMed ID: 9480850

DOI: 10.1006/bbrc.1998.8141

PubMed ID: 14702039

Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.

PubMed ID: 14702039

DOI: 10.1038/ng1285

PubMed ID: 18669648

Title: A quantitative atlas of mitotic phosphorylation.

PubMed ID: 18669648

DOI: 10.1073/pnas.0805139105

PubMed ID: 19690332

Title: Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions.

PubMed ID: 19690332

DOI: 10.1126/scisignal.2000007

PubMed ID: 20068231

Title: Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis.

PubMed ID: 20068231

DOI: 10.1126/scisignal.2000475

PubMed ID: 21834987

Title: Identification and characterization of a set of conserved and new regulators of cytoskeletal organisation, cell morphology and migration.

PubMed ID: 21834987

DOI: 10.1186/1741-7007-9-54

PubMed ID: 21406692

Title: System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation.

PubMed ID: 21406692

DOI: 10.1126/scisignal.2001570

PubMed ID: 23186163

Title: Toward a comprehensive characterization of a human cancer cell phosphoproteome.

PubMed ID: 23186163

DOI: 10.1021/pr300630k

PubMed ID: 25593309

Title: Screen identifies bromodomain protein ZMYND8 in chromatin recognition of transcription-associated DNA damage that promotes homologous recombination.

PubMed ID: 25593309

DOI: 10.1101/gad.252189.114

PubMed ID: 33389130

Title: Bi-allelic BRWD1 variants cause male infertility with asthenoteratozoospermia and likely primary ciliary dyskinesia.

PubMed ID: 33389130

DOI: 10.1007/s00439-020-02241-4

PubMed ID: 22464331

Title: Histone recognition and large-scale structural analysis of the human bromodomain family.

PubMed ID: 22464331

DOI: 10.1016/j.cell.2012.02.013

Sequence Information:

  • Length: 2320
  • Mass: 262936
  • Checksum: 109714D79B9057E9
  • Sequence:
  • MAEPSSARRP VPLIESELYF LIARYLSAGP CRRAAQVLVQ ELEQYQLLPK RLDWEGNEHN 
    RSYEELVLSN KHVAPDHLLQ ICQRIGPMLD KEIPPSISRV TSLLGAGRQS LLRTAKDCRH 
    TVWKGSAFAA LHRGRPPEMP VNYGSPPNLV EIHRGKQLTG CSTFSTAFPG TMYQHIKMHR 
    RILGHLSAVY CVAFDRTGHR IFTGSDDCLV KIWSTHNGRL LSTLRGHSAE ISDMAVNYEN 
    TMIAAGSCDK IIRVWCLRTC APVAVLQGHT GSITSLQFSP MAKGSQRYMV STGADGTVCF 
    WQWDLESLKF SPRPLKFTEK PRPGVQMLCS SFSVGGMFLA TGSTDHVIRM YFLGFEAPEK 
    IAELESHTDK VDSIQFCNNG DRFLSGSRDG TARIWRFEQL EWRSILLDMA TRISGDLSSE 
    EERFMKPKVT MIAWNQNDSI VVTAVNDHVL KVWNSYTGQL LHNLMGHADE VFVLETHPFD 
    SRIMLSAGHD GSIFIWDITK GTKMKHYFNM IEGQGHGAVF DCKFSQDGQH FACTDSHGHL 
    LIFGFGCSKP YEKIPDQMFF HTDYRPLIRD SNNYVLDEQT QQAPHLMPPP FLVDVDGNPH 
    PTKYQRLVPG RENSADEHLI PQLGYVATSD GEVIEQIISL QTNDNDERSP ESSILDGMIR 
    QLQQQQDQRM GADQDTIPRG LSNGEETPRR GFRRLSLDIQ SPPNIGLRRS GQVEGVRQMH 
    QNAPRSQIAT ERDLQAWKRR VVVPEVPLGI FRKLEDFRLE KGEEERNLYI IGRKRKTLQL 
    SHKSDSVVLV SQSRQRTCRR KYPNYGRRNR SWRELSSGNE SSSSVRHETS CDQSEGSGSS 
    EEDEWRSDRK SESYSESSSD SSSRYSDWTA DAGINLQPPL RTSCRRRITR FCSSSEDEIS 
    TENLSPPKRR RKRKKENKPK KENLRRMTPA ELANMEHLYE FHPPVWITDT TLRKSPFVPQ 
    MGDEVIYFRQ GHEAYIEAVR RNNIYELNPN KEPWRKMDLR DQELVKIVGI RYEVGPPTLC 
    CLKLAFIDPA TGKLMDKSFS IRYHDMPDVI DFLVLRQFYD EARQRNWQSC DRFRSIIDDA 
    WWFGTVLSQE PYQPQYPDSH FQCYIVRWDN TEIEKLSPWD MEPIPDNVDP PEELGASISV 
    TTDELEKLLY KPQAGEWGQK SRDEECDRII SGIDQLLNLD IAAAFAGPVD LCTYPKYCTV 
    VAYPTDLYTI RMRLVNRFYR RLSALVWEVR YIEHNARTFN EPESVIARSA KKITDQLLKF 
    IKNQHCTNIS ELSNTSENDE QNAEDLDDSD LPKTSSGRRR VHDGKKSIRA TNYVESNWKK 
    QCKELVNLIF QCEDSEPFRQ PVDLVEYPDY RDIIDTPMDF GTVRETLDAG NYDSPLEFCK 
    DIRLIFSNAK AYTPNKRSKI YSMTLRLSAL FEEKMKKISS DFKIGQKFNE KLRRSQRFKQ 
    RQNCKGDSQP NKSIRNLKPK RLKSQTKIIP ELVGSPTQST SSRTAYLGTH KTSAGISSGV 
    TSGDSSDSAE SSERRKRNRP ITNGSTLSES EVEDSLATSL SSSASSSSEE SKESSRARES 
    SSRSGLSRSS NLRVTRTRAA QRKTGPVSLA NGCGRKATRK RVYLSDSDNN SLETGEILKA 
    RAGNNRKVLR KCAAVAANKI KLMSDVEENS SSESVCSGRK LPHRNASAVA RKKLLHNSED 
    EQSLKSEIEE EELKDENQLL PVSSSHTAQS NVDESENRDS ESESDLRVAR KNWHANGYKS 
    HTPAPSKTKF LKIESSEEDS KSHDSDHACN RTAGPSTSVQ KLKAESISEE ADSEPGRSGG 
    RKYNTFHKNA SFFKKTKILS DSEDSESEEQ DREDGKCHKM EMNPISGNLN CDPIAMSQCS 
    SDHGCETDLD SDDDKIEKPN NFMKDSASQD NGLSRKISRK RVCSSDSDSS LQVVKKSSKA 
    RTGLLRITRR CAATAANKIK LMSDVEDVSL ENVHTRSKNG RKKPLHLACT TAKKKLSDCE 
    GSVHCEVPSE QYACEGKPPD PDSEGSTKVL SQALNGDSDS EDMLNSEHKH RHTNIHKIDA 
    PSKRKSSSVT SSGEDSKSHI PGSETDRTFS SESTLAQKAT AENNFEVELN YGLRRWNGRR 
    LRTYGKAPFS KTKVIHDSQE TAEKEVKRKR SHPELENVKI SETTGNSKFR PDTSSKSSDL 
    GSVTESDIDC TDNTKTKRRK TKGKAKVVRK EFVPRDREPN TKVRTCMHNQ KDAVQMPSET 
    LKAKMVPEKV PRRCATVAAN KIKIMSNLKE TISGPENVWI RKSSRKLPHR NASAAAKKKL 
    LNVYKEDDTT INSESEKELE DINRKMLFLR GFRSWKENAQ