Details for: ATP6V0D1

Gene ID: 9114

Gene Type:  Protein-coding  - A gene that serves as a template for producing a messenger RNA (mRNA) molecule, which is then translated into a functional protein.

Symbol: ATP6V0D1

Ensembl ID: ENSG00000159720

Description: ATPase H+ transporting V0 subunit d1

Selected Context(s):  Overall

Cell Significance Landscape

Contexts:

Associated with

Significant Cells

Cell Significance Index (CSI) scores for the chosen context(s)

  • elicited macrophage CL0000861
    CSI 61.31
    rCSI 56.29%
    PRS 41.53
  • pancreatic D cell CL0000173
    CSI 43.95
    rCSI 43.22%
    PRS 37.55
  • CD14-low, CD16-positive monocyte CL0002396
    CSI 36.7
    rCSI 28.28%
    PRS 33.7
  • pancreatic A cell CL0000171
    CSI 29.28
    rCSI 30.68%
    PRS 37.38
  • central memory CD8-positive, alpha-beta T cell CL0000907
    CSI 25.61
    rCSI 17.25%
    PRS 43.82
  • alveolar macrophage CL0000583
    CSI 24.12
    rCSI 39.73%
    PRS 40.2
  • tracheobronchial smooth muscle cell CL0019019
    CSI 24.1
    rCSI 42.5%
    PRS 43.57
  • Hofbauer cell CL3000001
    CSI 21.43
    rCSI 40.45%
    PRS 44.14
  • promonocyte CL0000559
    CSI 19.08
    rCSI 32.69%
    PRS 44.36
  • pancreatic ductal cell CL0002079
    CSI 17.71
    rCSI 34.45%
    PRS 36.7
  • alveolar adventitial fibroblast CL4028006
    CSI 15.47
    rCSI 24.44%
    PRS 35.91
  • intermediate monocyte CL0002393
    CSI 15.06
    rCSI 22.73%
    PRS 36.5
  • retina horizontal cell CL0000745
    CSI 14.57
    rCSI 22.21%
    PRS 32.76
  • kidney loop of Henle thin ascending limb epithelial cell CL1001107
    CSI 12.14
    rCSI 31.39%
    PRS 32.37
  • pancreatic PP cell CL0002275
    CSI 12.09
    rCSI 48.1%
    PRS 51.3
  • type B pancreatic cell CL0000169
    CSI 12.07
    rCSI 26.71%
    PRS 32.79
  • pancreatic epsilon cell CL0005019
    CSI 11.01
    rCSI 51.35%
    PRS 59.99
  • ionocyte CL0005006
    CSI 10.75
    rCSI 11.52%
    PRS 33.09
  • renal alpha-intercalated cell CL0005011
    CSI 10.41
    rCSI 13.92%
    PRS 42.8
  • granulocyte monocyte progenitor cell CL0000557
    CSI 10.4
    rCSI 9%
    PRS 38.88
  • amacrine cell CL0000561
    CSI 10.18
    rCSI 29.5%
    PRS 28.47
  • double-positive, alpha-beta thymocyte CL0000809
    CSI 9.91
    rCSI 10.1%
    PRS 47.12
  • CD14-positive, CD16-negative classical monocyte CL0002057
    CSI 9.57
    rCSI 57.93%
    PRS 61.48
  • astrocyte of the cerebral cortex CL0002605
    CSI 9
    rCSI 20.18%
    PRS 23.1
  • enterocyte CL0000584
    CSI 8.97
    rCSI 14.47%
    PRS 45.63
  • respiratory suprabasal cell CL4033048
    CSI 8.97
    rCSI 11.5%
    PRS 39.78
  • group 3 innate lymphoid cell CL0001071
    CSI 8.26
    rCSI 6.21%
    PRS 37.92
  • common myeloid progenitor CL0000049
    CSI 7.73
    rCSI 6.25%
    PRS 35.7
  • megakaryocyte-erythroid progenitor cell CL0000050
    CSI 7.66
    rCSI 6.92%
    PRS 32.5
  • myeloid leukocyte CL0000766
    CSI 7.36
    rCSI 6.79%
    PRS 36.37
  • intestinal tuft cell CL0019032
    CSI 7.2
    rCSI 11%
    PRS 39.59
  • effector CD4-positive, alpha-beta T cell CL0001044
    CSI 7.13
    rCSI 20.45%
    PRS 51
  • retinal pigment epithelial cell CL0002586
    CSI 7.08
    rCSI 14.06%
    PRS 35.39
  • enterocyte of epithelium of large intestine CL0002071
    CSI 6.99
    rCSI 36.71%
    PRS 51.22
  • dendritic cell, human CL0001056
    CSI 6.71
    rCSI 10.31%
    PRS 41.35
  • luminal epithelial cell of mammary gland CL0002326
    CSI 6.54
    rCSI 11.88%
    PRS 50.71
  • innate lymphoid cell CL0001065
    CSI 6.48
    rCSI 13.39%
    PRS 43.91
  • platelet CL0000233
    CSI 6.04
    rCSI 25.07%
    PRS 47.39
  • melanocyte CL0000148
    CSI 6.03
    rCSI 4.46%
    PRS 30.32
  • double negative thymocyte CL0002489
    CSI 5.82
    rCSI 4.05%
    PRS 42.39
  • mesenchymal cell CL0008019
    CSI 5.7
    rCSI 14.49%
    PRS 32.92
  • neuroendocrine cell CL0000165
    CSI 5.67
    rCSI 21.94%
    PRS 55.49
  • kidney connecting tubule epithelial cell CL1000768
    CSI 5.64
    rCSI 14.3%
    PRS 27.69
  • colon goblet cell CL0009039
    CSI 5.61
    rCSI 13.33%
    PRS 47.76
  • alpha-beta T cell CL0000789
    CSI 5.35
    rCSI 6.27%
    PRS 48.68
  • colon macrophage CL0009038
    CSI 5.33
    rCSI 24.61%
    PRS 58.66
  • squamous epithelial cell CL0000076
    CSI 5.25
    rCSI 12.47%
    PRS 41.16
  • retinal ganglion cell CL0000740
    CSI 5.23
    rCSI 11.55%
    PRS 25.92
  • hematopoietic stem cell CL0000037
    CSI 5.19
    rCSI 3.45%
    PRS 39.62
  • erythrocyte CL0000232
    CSI 5.18
    rCSI 11.75%
    PRS 41.48
  • effector CD8-positive, alpha-beta T cell CL0001050
    CSI 5.13
    rCSI 3.9%
    PRS 45.05
  • vascular associated smooth muscle cell CL0000359
    CSI 5.1
    rCSI 16.54%
    PRS 39.05
  • chandelier pvalb GABAergic cortical interneuron CL4023036
    CSI 4.9
    rCSI 15.32%
    PRS 25.48
  • M cell of gut CL0000682
    CSI 4.88
    rCSI 5.19%
    PRS 51.1
  • ciliated epithelial cell CL0000067
    CSI 4.83
    rCSI 4.25%
    PRS 26.32
  • peripheral nervous system neuron CL2000032
    CSI 4.78
    rCSI 6.52%
    PRS 30.37
  • memory T cell CL0000813
    CSI 4.72
    rCSI 9.09%
    PRS 65.16
  • sncg GABAergic cortical interneuron CL4023015
    CSI 4.62
    rCSI 7.43%
    PRS 24.42
  • plasmablast CL0000980
    CSI 4.57
    rCSI 3.59%
    PRS 41
  • conventional dendritic cell CL0000990
    CSI 4.55
    rCSI 3.8%
    PRS 60.4
  • CD4-positive helper T cell CL0000492
    CSI 4.46
    rCSI 3.37%
    PRS 46.29
  • respiratory basal cell CL0002633
    CSI 4.4
    rCSI 4.56%
    PRS 40.69
  • ciliated columnar cell of tracheobronchial tree CL0002145
    CSI 4.33
    rCSI 9.88%
    PRS 34.62
  • epithelial cell of lower respiratory tract CL0002632
    CSI 4.32
    rCSI 3.35%
    PRS 35
  • neural crest cell CL0011012
    CSI 4.3
    rCSI 3.4%
    PRS 25.08
  • rod bipolar cell CL0000751
    CSI 4.27
    rCSI 7.67%
    PRS 29.92
  • lung pericyte CL0009089
    CSI 4.14
    rCSI 10.91%
    PRS 41.67
  • pulmonary capillary endothelial cell CL4028001
    CSI 4.01
    rCSI 7.65%
    PRS 51.62
  • CD4-positive, alpha-beta thymocyte CL0000810
    CSI 3.92
    rCSI 3.14%
    PRS 56.01
  • placental villous trophoblast CL2000060
    CSI 3.88
    rCSI 6%
    PRS 33.5
  • neutrophil CL0000775
    CSI 3.88
    rCSI 21.7%
    PRS 49.83
  • cerebral cortex neuron CL0010012
    CSI 3.86
    rCSI 15.71%
    PRS 34.72
  • L5 extratelencephalic projecting glutamatergic cortical neuron CL4023041
    CSI 3.8
    rCSI 13.68%
    PRS 21.55
  • alternatively activated macrophage CL0000890
    CSI 3.76
    rCSI 4.73%
    PRS 48.49
  • mature NK T cell CL0000814
    CSI 3.72
    rCSI 4.76%
    PRS 72.45
  • ciliated cell CL0000064
    CSI 3.72
    rCSI 6.02%
    PRS 34.48
  • myofibroblast cell CL0000186
    CSI 3.67
    rCSI 5.08%
    PRS 41.84
  • non-classical monocyte CL0000875
    CSI 3.65
    rCSI 5.85%
    PRS 65.71
  • activated type II NK T cell CL0000931
    CSI 3.64
    rCSI 4.1%
    PRS 50.71
  • lung ciliated cell CL1000271
    CSI 3.61
    rCSI 4.18%
    PRS 26.96
  • pancreatic stellate cell CL0002410
    CSI 3.59
    rCSI 20.87%
    PRS 46.78
  • CD4-positive, CD25-positive, alpha-beta regulatory T cell CL0000792
    CSI 3.58
    rCSI 3.52%
    PRS 49.74
  • stem cell CL0000034
    CSI 3.56
    rCSI 3.43%
    PRS 27.32
  • glioblast CL0000030
    CSI 3.54
    rCSI 5.65%
    PRS 30.29
  • CD14-positive monocyte CL0001054
    CSI 3.53
    rCSI 4.4%
    PRS 46.16
  • lung interstitial macrophage CL4033043
    CSI 3.51
    rCSI 7.89%
    PRS 56.92
  • acinar cell CL0000622
    CSI 3.48
    rCSI 5.11%
    PRS 45.18
  • lung macrophage CL1001603
    CSI 3.48
    rCSI 7.77%
    PRS 40.9
  • lung neuroendocrine cell CL1000223
    CSI 3.47
    rCSI 5.14%
    PRS 39.62
  • secretory cell CL0000151
    CSI 3.42
    rCSI 3.57%
    PRS 35.9
  • mesodermal cell CL0000222
    CSI 3.33
    rCSI 4%
    PRS 33.84
  • perivascular cell CL4033054
    CSI 3.33
    rCSI 4.55%
    PRS 39.36
  • hepatic stellate cell CL0000632
    CSI 3.31
    rCSI 12.38%
    PRS 30.09
  • epithelial cell CL0000066
    CSI 3.28
    rCSI 5.05%
    PRS 40.19
  • fallopian tube secretory epithelial cell CL4030006
    CSI 3.27
    rCSI 3.15%
    PRS 36.05
  • plasmacytoid dendritic cell, human CL0001058
    CSI 3.24
    rCSI 2.26%
    PRS 37.06
  • intestine goblet cell CL0019031
    CSI 3.21
    rCSI 2.85%
    PRS 34.81
  • Kupffer cell CL0000091
    CSI 3.14
    rCSI 7.19%
    PRS 34.81
  • Mueller cell CL0000636
    CSI 3.12
    rCSI 7.12%
    PRS 30.43
  • effector memory CD8-positive, alpha-beta T cell, terminally differentiated CL0001062
    CSI 3.11
    rCSI 15.61%
    PRS 44.93
  • acinar cell of salivary gland CL0002623
    CSI 0.1
    rCSI 1.4%
    PRS 58.2%
  • enteric neuron CL0007011
    CSI 0.2
    rCSI 2.4%
    PRS 60.0%
  • epithelial cell of esophagus CL0002252
    CSI 0.3
    rCSI 2.5%
    PRS 66.3%
  • enterocyte of epithelium of small intestine CL1000334
    CSI 0.3
    rCSI 4.4%
    PRS 64.0%
  • bronchial goblet cell CL1000312
    CSI 0.3
    rCSI 1.2%
    PRS 57.6%
  • intestinal crypt stem cell of colon CL0009043
    CSI 0.3
    rCSI 2.2%
    PRS 55.8%
  • eosinophil CL0000771
    CSI 0.3
    rCSI 2.0%
    PRS 67.6%
  • myeloid dendritic cell, human CL0001057
    CSI 0.3
    rCSI 1.8%
    PRS 70.2%
  • paneth cell CL0000510
    CSI 0.3
    rCSI 0.5%
    PRS 51.7%
  • basal cell of epithelium of trachea CL1000348
    CSI 0.4
    rCSI 2.6%
    PRS 63.3%
  • tracheobronchial serous cell CL0019001
    CSI 0.4
    rCSI 1.8%
    PRS 52.5%
  • parietal cell CL0000162
    CSI 0.4
    rCSI 3.8%
    PRS 77.5%
  • lung goblet cell CL1000143
    CSI 0.6
    rCSI 6.1%
    PRS 72.4%
  • podocyte CL0000653
    CSI 0.6
    rCSI 2.5%
    PRS 33.9%
  • paneth cell of epithelium of small intestine CL1000343
    CSI 0.6
    rCSI 1.6%
    PRS 50.2%
  • corticothalamic-projecting glutamatergic cortical neuron CL4023013
    CSI 0.6
    rCSI 3.3%
    PRS 23.7%
  • forebrain radial glial cell CL0013000
    CSI 0.7
    rCSI 2.2%
    PRS 43.8%
  • dopaminergic neuron CL0000700
    CSI 0.7
    rCSI 3.9%
    PRS 24.1%
  • transit amplifying cell of small intestine CL0009012
    CSI 0.7
    rCSI 3.1%
    PRS 55.4%
  • serotonergic neuron CL0000850
    CSI 0.7
    rCSI 3.2%
    PRS 25.2%
  • megakaryocyte CL0000556
    CSI 0.7
    rCSI 3.2%
    PRS 51.8%
  • caudal ganglionic eminence derived cortical interneuron CL4023064
    CSI 0.8
    rCSI 1.4%
    PRS 21.8%
  • basophil CL0000767
    CSI 0.8
    rCSI 1.7%
    PRS 57.2%
  • small intestine goblet cell CL1000495
    CSI 0.8
    rCSI 1.8%
    PRS 45.1%
  • lamp5 GABAergic cortical interneuron CL4023011
    CSI 0.8
    rCSI 1.4%
    PRS 22.6%
  • CD4-positive, alpha-beta cytotoxic T cell CL0000934
    CSI 0.8
    rCSI 1.1%
    PRS 55.9%
  • small pre-B-II cell CL0000954
    CSI 0.9
    rCSI 0.8%
    PRS 59.4%
  • deuterosomal cell CL4033044
    CSI 0.9
    rCSI 2.9%
    PRS 46.6%
  • professional antigen presenting cell CL0000145
    CSI 0.9
    rCSI 3.0%
    PRS 69.4%
  • sst GABAergic cortical interneuron CL4023017
    CSI 0.9
    rCSI 1.1%
    PRS 23.3%
  • intestinal crypt stem cell of small intestine CL0009017
    CSI 0.9
    rCSI 2.4%
    PRS 44.0%
  • type L enteroendocrine cell CL0002279
    CSI 0.9
    rCSI 1.7%
    PRS 56.1%
  • germinal center B cell CL0000844
    CSI 0.9
    rCSI 2.6%
    PRS 59.7%
  • muscle cell CL0000187
    CSI 0.9
    rCSI 1.9%
    PRS 58.0%
  • respiratory epithelial cell CL0002368
    CSI 0.9
    rCSI 5.7%
    PRS 72.7%
  • mesenchymal stem cell CL0000134
    CSI 0.9
    rCSI 10.0%
    PRS 52.7%
  • progenitor cell CL0011026
    CSI 1.0
    rCSI 2.0%
    PRS 42.4%
  • tissue-resident macrophage CL0000864
    CSI 1.0
    rCSI 4.6%
    PRS 56.2%
  • microcirculation associated smooth muscle cell CL0008035
    CSI 1.0
    rCSI 2.9%
    PRS 38.1%
  • CD8-positive, CD28-negative, alpha-beta regulatory T cell CL0000920
    CSI 1.0
    rCSI 2.1%
    PRS 52.7%
  • tracheal goblet cell CL1000329
    CSI 1.1
    rCSI 2.3%
    PRS 55.8%
  • cerebral cortex endothelial cell CL1001602
    CSI 1.1
    rCSI 1.9%
    PRS 27.6%
  • cardiac muscle cell CL0000746
    CSI 1.1
    rCSI 1.6%
    PRS 28.2%
  • immature B cell CL0000816
    CSI 1.1
    rCSI 0.8%
    PRS 47.6%
  • renal principal cell CL0005009
    CSI 1.1
    rCSI 2.9%
    PRS 41.4%
  • enteroendocrine cell of small intestine CL0009006
    CSI 1.1
    rCSI 2.5%
    PRS 49.6%
  • IgG plasma cell CL0000985
    CSI 1.1
    rCSI 1.4%
    PRS 53.9%
  • syncytiotrophoblast cell CL0000525
    CSI 1.2
    rCSI 3.3%
    PRS 53.8%
  • transit amplifying cell of colon CL0009011
    CSI 1.2
    rCSI 1.4%
    PRS 39.0%
  • large pre-B-II cell CL0000957
    CSI 1.2
    rCSI 3.5%
    PRS 50.5%
  • L6b glutamatergic cortical neuron CL4023038
    CSI 1.2
    rCSI 3.9%
    PRS 23.5%
  • type EC enteroendocrine cell CL0000577
    CSI 1.2
    rCSI 4.4%
    PRS 49.3%
  • OFF-bipolar cell CL0000750
    CSI 1.3
    rCSI 1.7%
    PRS 46.2%
  • serous secreting cell of bronchus submucosal gland CL4033005
    CSI 1.3
    rCSI 7.2%
    PRS 70.0%
  • club cell CL0000158
    CSI 1.3
    rCSI 1.9%
    PRS 36.4%
  • pulmonary artery endothelial cell CL1001568
    CSI 1.3
    rCSI 1.7%
    PRS 47.9%
  • choroid plexus epithelial cell CL0000706
    CSI 1.3
    rCSI 2.1%
    PRS 27.8%
  • Cajal-Retzius cell CL0000695
    CSI 1.3
    rCSI 10.4%
    PRS 54.1%
  • transit amplifying cell CL0009010
    CSI 1.3
    rCSI 2.1%
    PRS 51.5%
  • erythroid progenitor cell CL0000038
    CSI 1.4
    rCSI 7.7%
    PRS 46.4%
  • renal beta-intercalated cell CL0002201
    CSI 1.4
    rCSI 3.3%
    PRS 38.3%
  • CD8-positive, alpha-beta cytotoxic T cell CL0000794
    CSI 1.4
    rCSI 1.7%
    PRS 54.4%
  • respiratory goblet cell CL0002370
    CSI 1.4
    rCSI 15.4%
    PRS 56.5%
  • extravillous trophoblast CL0008036
    CSI 1.4
    rCSI 1.8%
    PRS 31.7%
  • tuft cell of colon CL0009041
    CSI 1.4
    rCSI 3.3%
    PRS 55.4%
  • cerebellar granule cell CL0001031
    CSI 1.5
    rCSI 2.1%
    PRS 32.7%
  • myeloid dendritic cell CL0000782
    CSI 1.5
    rCSI 2.1%
    PRS 50.5%
  • foveolar cell of stomach CL0002179
    CSI 1.5
    rCSI 3.1%
    PRS 50.3%
  • kidney epithelial cell CL0002518
    CSI 1.5
    rCSI 2.9%
    PRS 59.1%
  • retinal cone cell CL0000573
    CSI 1.5
    rCSI 2.4%
    PRS 27.7%
  • promyelocyte CL0000836
    CSI 1.5
    rCSI 2.2%
    PRS 45.1%
  • conjunctival epithelial cell CL1000432
    CSI 1.6
    rCSI 2.4%
    PRS 35.6%
  • mucus secreting cell CL0000319
    CSI 1.6
    rCSI 2.5%
    PRS 44.5%
  • retinal bipolar neuron CL0000748
    CSI 1.6
    rCSI 2.9%
    PRS 27.0%
  • duct epithelial cell CL0000068
    CSI 1.6
    rCSI 2.3%
    PRS 37.6%
  • myelocyte CL0002193
    CSI 1.6
    rCSI 10.7%
    PRS 71.3%
  • intrahepatic cholangiocyte CL0002538
    CSI 1.6
    rCSI 3.9%
    PRS 52.7%
  • respiratory hillock cell CL4030023
    CSI 1.6
    rCSI 2.9%
    PRS 51.6%
  • effector memory CD4-positive, alpha-beta T cell CL0000905
    CSI 1.7
    rCSI 2.2%
    PRS 63.8%
  • Bergmann glial cell CL0000644
    CSI 1.7
    rCSI 2.3%
    PRS 33.4%
  • BEST4+ enteroycte CL4030026
    CSI 1.7
    rCSI 2.1%
    PRS 37.7%
  • natural T-regulatory cell CL0000903
    CSI 1.7
    rCSI 3.2%
    PRS 70.6%
  • mature B cell CL0000785
    CSI 1.7
    rCSI 1.5%
    PRS 43.4%
  • vascular leptomeningeal cell CL4023051
    CSI 1.7
    rCSI 3.0%
    PRS 28.7%
  • basal cell of prostate epithelium CL0002341
    CSI 1.7
    rCSI 5.0%
    PRS 56.4%
  • ON-bipolar cell CL0000749
    CSI 1.7
    rCSI 2.6%
    PRS 38.6%
  • keratinocyte CL0000312
    CSI 1.8
    rCSI 1.5%
    PRS 40.2%
  • differentiation-committed oligodendrocyte precursor CL4023059
    CSI 1.8
    rCSI 3.2%
    PRS 30.7%
  • glandular epithelial cell CL0000150
    CSI 1.8
    rCSI 4.7%
    PRS 58.5%
  • multi-ciliated epithelial cell CL0005012
    CSI 1.8
    rCSI 1.8%
    PRS 30.4%
  • neuroblast (sensu Nematoda and Protostomia) CL0000338
    CSI 1.8
    rCSI 2.1%
    PRS 30.9%
  • bronchus fibroblast of lung CL2000093
    CSI 1.8
    rCSI 1.5%
    PRS 36.1%
  • corneal epithelial cell CL0000575
    CSI 1.9
    rCSI 5.5%
    PRS 53.4%
  • granulocyte CL0000094
    CSI 1.9
    rCSI 3.0%
    PRS 43.7%
  • lung secretory cell CL1000272
    CSI 2.0
    rCSI 4.8%
    PRS 33.5%
  • erythroblast CL0000765
    CSI 2.0
    rCSI 5.2%
    PRS 48.6%
  • epithelial cell of proximal tubule CL0002306
    CSI 2.0
    rCSI 4.8%
    PRS 32.9%
  • paneth cell of colon CL0009009
    CSI 2.0
    rCSI 19.5%
    PRS 63.6%
  • enteroendocrine cell CL0000164
    CSI 2.0
    rCSI 2.7%
    PRS 38.1%
  • class switched memory B cell CL0000972
    CSI 2.0
    rCSI 1.5%
    PRS 53.1%

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Network Configuration

Explore relationships of the current gene. Select an Interaction Source: 'ONTOLOGY' for shared pathways (GO/Reactome) or 'STRING' for protein-protein interactions. Further refine by selecting context genes and comparing Cell Significance Index (CSI) scores between baseline and target cell types and their specific contexts.

Comma-separated if multiple.
Comma-separated if multiple.

Legend:
  • Query Gene
  • Node Color (Target Cell CSI, relative to current network):
    • Very High
    • High
    • Medium
    • Low
    • Very Low
    • CSI N/A
  • Node Size: Proportional to Target Cell CSI magnitude
  • STRING PPI Edge
  • Shared Pathway Edge (ONTOLOGY)

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Other Information

This section provides additional information about the gene, including a description generated by an AI language model and details about associated proteins.

## Summary **[ATP6V0D1](/details-gene/9114)** encodes the d1 subunit of the vacuolar-type H+-ATPase (V-ATPase), a multi-subunit enzyme essential for acidifying intracellular organelles. This proton pump plays a fundamental housekeeping role by maintaining the pH of compartments like lysosomes, endosomes, and synaptic vesicles, thereby regulating processes such as protein degradation, receptor-mediated endocytosis, and neurotransmitter loading. **Overall**, expression data reveals that [ATP6V0D1](/details-gene/9114) is a highly significant gene in professional phagocytes, particularly the **[elicited macrophage](/details-cell/CL0000861)**, as well as in various secretory cell types, including **[pancreatic D cells](/details-cell/CL0000173)** and **[pancreatic A cells](/details-cell/CL0000171)**. This expression pattern underscores its critical function in cellular processes that depend on strict compartmental pH control, such as pathogen clearance, hormone processing, and nutrient sensing. ## Cellular Roles and Expression Landscape The expression profile of **[ATP6V0D1](/details-gene/9114)** highlights its importance in cells with high metabolic, phagocytic, and secretory activity. The gene's highest significance is observed in myeloid lineage cells, including **[elicited macrophage](/details-cell/CL0000861)** (CSI: 61.31), **[CD14-low, CD16-positive monocyte](/details-cell/CL0002396)** (CSI: 36.70), **[alveolar macrophage](/details-cell/CL0000583)** (CSI: 24.12), and **[promonocyte](/details-cell/CL0000559)** (CSI: 19.08). This is consistent with the V-ATPase's indispensable role in acidifying phagosomes and lysosomes, a key step in pathogen degradation and antigen presentation. Beyond the immune system, **[ATP6V0D1](/details-gene/9114)** shows prominent significance in specialized endocrine and exocrine cells of the pancreas, such as **[pancreatic D cells](/details-cell/CL0000173)** and **[pancreatic A cells](/details-cell/CL0000171)**. This suggests a crucial function in the maturation and secretion of hormones like somatostatin and glucagon, where the acidification of secretory granules is required for prohormone cleavage and storage. Its activity is also noted in other diverse cell types requiring robust ion transport or compartmental regulation, including **[central memory CD8-positive, alpha-beta T cells](/details-cell/CL0000907)**, **[tracheobronchial smooth muscle cells](/details-cell/CL0019019)**, and **[kidney loop of Henle thin ascending limb epithelial cells](/details-cell/CL1001107)**. The broad yet distinct expression pattern indicates that while V-ATPase is a ubiquitous complex, the **[ATP6V0D1](/details-gene/9114)** subunit is particularly integral to the function of highly dynamic and specialized cell types. ## Pathways and Molecular Function Functionally, **[ATP6V0D1](/details-gene/9114)** is an integral component of the V0 membrane-intrinsic domain of the V-ATPase complex ([GO:0000220](https://www.ebi.ac.uk/QuickGO/term/GO:0000220)), which forms the proton-conducting pore. Its activity is central to **[proton transmembrane transport](/details-go/GO:1902600)** and the resulting **[vacuolar acidification](/details-go/GO:0007035)**. This core function enables a wide array of downstream cellular processes. The high expression in macrophages is directly linked to its role in the **[innate immune system](/details-reactome/R-HSA-168249)**, specifically in the function of the **[phagocytic vesicle membrane](/details-go/GO:0030670)** and the subsequent production of reactive oxygen and nitrogen species ([R-HSA-1222556](https://reactome.org/content/detail/R-HSA-1222556)). Beyond immunity, the V-ATPase complex acts as a metabolic sensor. It is implicated in pathways that regulate nutrient signaling, such as **[Amino acids regulate mTORC1](/details-reactome/R-HSA-9639288)** and **[Signaling by insulin receptor](/details-reactome/R-HSA-74752)**, by controlling lysosomal homeostasis ([Link](https://doi.org/10.1111/gtc.12583)). Research has also demonstrated a role for the V-ATPase complex in regulating **[intracellular iron ion homeostasis](/details-go/GO:0006879)**, which in turn controls HIF1alpha stability ([Link](https://doi.org/10.7554/elife.22693)). Furthermore, **[ATP6V0D1](/details-gene/9114)** is involved in more specialized functions, including **[synaptic vesicle lumen acidification](/details-go/GO:0097401)** in neurons and **[cilium assembly](/details-go/GO:0060271)** ([Link](https://doi.org/10.1038/cr.2011.134)), highlighting its pleiotropic effects across different cell lineages. ## Research Directions Based on its expression profile and known functions, several key research avenues for **[ATP6V0D1](/details-gene/9114)** can be proposed. 1. **Role in Macrophage Antimicrobial Efficacy:** Given its premier significance in **[elicited macrophages](/details-cell/CL0000861)**, it is hypothesized that the expression level of **[ATP6V0D1](/details-gene/9114)** directly correlates with the bactericidal capacity of macrophages. Deficiencies in this subunit may lead to suboptimal phagolysosome acidification, creating a permissive environment for intracellular pathogens that are sensitive to low pH. 2. **Contribution to Pancreatic Islet Cell Function:** The high significance of **[ATP6V0D1](/details-gene/9114)** in pancreatic endocrine cells suggests a hypothesis that its dysfunction could contribute to metabolic diseases. Altered V-ATPase activity may impair the processing of prohormones (e.g., proglucagon) or the regulated release of hormones from secretory granules, potentially disrupting glucose homeostasis. 3. **Involvement in Iron-Related Lung Pathology:** The combination of its role in iron homeostasis ([Link](https://doi.org/10.7554/elife.22693)) and its high expression in **[alveolar macrophages](/details-cell/CL0000583)**, which are central to iron recycling in the lung, suggests that dysregulation of **[ATP6V0D1](/details-gene/9114)** in these cells could contribute to iron-driven inflammatory lung diseases. To test the first hypothesis regarding macrophage function, a compelling experiment would involve the CRISPR-Cas9-mediated knockout of **[ATP6V0D1](/details-gene/9114)** in a human monocyte cell line (e.g., THP-1) differentiated into macrophages. These knockout cells and their wild-type counterparts could then be challenged with pH-sensitive, fluorescently-labeled bacteria. The acidification of the phagosome could be quantified using ratiometric live-cell imaging or flow cytometry. A parallel gentamicin protection assay using an intracellular pathogen like *Salmonella Typhimurium* would directly assess the impact of **[ATP6V0D1](/details-gene/9114)** loss on the macrophages' bactericidal activity. Therapeutically, **[ATP6V0D1](/details-gene/9114)**, as part of the essential V-ATPase complex, presents a challenging target. Global inhibition would likely cause significant toxicity due to the enzyme's ubiquitous importance in cellular housekeeping. However, in contexts where cells become hyper-dependent on V-ATPase activity, such as certain cancers that use it to counteract acidosis in the tumor microenvironment ([Link](https://doi.org/10.1038/s41556-018-0219-8)), targeted inhibition could be a viable strategy. Therefore, its therapeutic potential may lie in the development of highly specific inhibitors or antibody-drug conjugates directed at cancer cells that overexpress V-ATPase components on their surface.

Genular Protein ID: 1067442254

Symbol: VA0D1_HUMAN

Name: V-type proton ATPase subunit d 1

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 8250920

Title: Cloning and tissue distribution of subunits C, D, and E of the human vacuolar H(+)-ATPase.

PubMed ID: 8250920

DOI: 10.1006/bbrc.1993.2434

PubMed ID: 11118322

Title: Structure of the VPATPD gene encoding subunit D of the human vacuolar proton ATPase.

PubMed ID: 11118322

DOI: 10.1006/bbrc.2000.4003

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 12384298

Title: Molecular cloning and characterization of novel tissue-specific isoforms of the human vacuolar H(+)-ATPase C, G and d subunits, and their evaluation in autosomal recessive distal renal tubular acidosis.

PubMed ID: 12384298

DOI: 10.1016/s0378-1119(02)00884-3

PubMed ID: 21269460

Title: Initial characterization of the human central proteome.

PubMed ID: 21269460

DOI: 10.1186/1752-0509-5-17

PubMed ID: 21844891

Title: A SNX10/V-ATPase pathway regulates ciliogenesis in vitro and in vivo.

PubMed ID: 21844891

DOI: 10.1038/cr.2011.134

PubMed ID: 25944712

Title: N-terminome analysis of the human mitochondrial proteome.

PubMed ID: 25944712

DOI: 10.1002/pmic.201400617

PubMed ID: 28296633

Title: The vacuolar-ATPase complex and assembly factors, TMEM199 and CCDC115, control HIF1alpha prolyl hydroxylation by regulating cellular iron levels.

PubMed ID: 28296633

DOI: 10.7554/elife.22693

PubMed ID: 29644770

Title: TMEM55B contributes to lysosomal homeostasis and amino acid-induced mTORC1 activation.

PubMed ID: 29644770

DOI: 10.1111/gtc.12583

PubMed ID: 30374053

Title: TMEM9 promotes intestinal tumorigenesis through vacuolar-ATPase-activated Wnt/beta-catenin signalling.

PubMed ID: 30374053

DOI: 10.1038/s41556-018-0219-8

PubMed ID: 33065002

Title: Structures of a Complete Human V-ATPase Reveal Mechanisms of Its Assembly.

PubMed ID: 33065002

DOI: 10.1016/j.molcel.2020.09.029

Sequence Information:

  • Length: 351
  • Mass: 40329
  • Checksum: A720F8A87511203C
  • Sequence:
  • MSFFPELYFN VDNGYLEGLV RGLKAGVLSQ ADYLNLVQCE TLEDLKLHLQ STDYGNFLAN 
    EASPLTVSVI DDRLKEKMVV EFRHMRNHAY EPLASFLDFI TYSYMIDNVI LLITGTLHQR 
    SIAELVPKCH PLGSFEQMEA VNIAQTPAEL YNAILVDTPL AAFFQDCISE QDLDEMNIEI 
    IRNTLYKAYL ESFYKFCTLL GGTTADAMCP ILEFEADRRA FIITINSFGT ELSKEDRAKL 
    FPHCGRLYPE GLAQLARADD YEQVKNVADY YPEYKLLFEG AGSNPGDKTL EDRFFEHEVK 
    LNKLAFLNQF HFGVFYAFVK LKEQECRNIV WIAECIAQRH RAKIDNYIPI F